BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04560.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470438 jgi|Araly1|470438|fgenesh2_kg.1__392__AT1G04560.1 1013 0.0
> Ahg470438 jgi|Araly1|470438|fgenesh2_kg.1__392__AT1G04560.1
Length=714
Score = 1013 bits (548), Expect = 0.0
Identities = 666/720 (93%), Gaps = 20/720 (3%)
Strand=Plus/Plus
Query 104 GAAGGTAAAAGAAGCAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 163
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGGTAAAAGAGGAAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 60
Query 164 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTTGGTTTTGCAAGTTGGTGTCTCAATA 223
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 61 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTAGGTTTCGCAAGTTGGTGTCTCAATA 120
Query 224 AATACATCAACGGCCAAACTAACCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 283
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AATACATCAACGGTCAAACTAATCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 180
Query 284 TCTTGACGTTTTCGATATTGGCGGCTGTGGTAGGAGTAGCGTCGAAG-TTGGCCGGAGCA 342
||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 181 TCTTGACGTTTTCGATATTGGCGGCGGTGGTAGGAGTAGCGTCGAAGATTG-CCGGAGCT 239
Query 343 AATCATATTAGGTTTTGGAGGAATGATAGTTTAGCCGCTGCTGGAGCTTCTTCCATCGTT 402
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 240 AATCATATTAGGTTTTGGAGGAATGATAGTCTGGCCGCTGCCGGAGCTTCTTCCATCGTT 299
Query 403 GCATGGGCTATCACAGCTCTTGCCATGGGGTTGGCATGCAAACAAATAAACATAGGAGGA 462
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GCATGGGCCATCACAGCTCTTGCCATGGGGTTGGCATGCAAGCAAATAAACATAGGAGGA 359
Query 463 TGGAGAGGATGGAGACTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACGCAG 522
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TGGAGAGGATGGAGATTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACTCAA 419
Query 523 CTT-CTCTACCTCATGTTGATCCATGCCGGT-TCACTCAGCAGCAAATATGGTCCTGGAT 580
|| |||||| ||||||||||||| ||||| | | | |||||||||||||||||||| |
Sbjct 420 -TTGCTCTACGTCATGTTGATCCACGCCGGCGT-ATTGAGCAGCAAATATGGTCCTGGCT 477
Query 581 ACAGAGACCAAGACTATGCTACAGGCCAAG--C-T--C-ATGGTCATGGTCATGTACCAC 634
|||||||||| ||||| ||||||||||||| | | | |||||||||||||||||||||
Sbjct 478 ACAGAGACCAGGACTACGCTACAGGCCAAGGTCATGGCCATGGTCATGGTCATGTACCAC 537
Query 635 ACACTGTGGGAGAGCACAAGGCTGGTGTTGGATCTACCATGGCAGTCTGATGAAAA-TCT 693
|||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| ||
Sbjct 538 ACACTGTGGGCGAGCACAAGGCTGGTGTTGGAAGTACCATGGCAGTTTGAT-AAACGTC- 595
Query 694 GTGTCTTTTAATTGTGTTTTGACGTTTGGTTAAGAAGTACTTATTAT----AGTTTATGT 749
|||| ||||||||||||||||||| |||| |||||||||||||| || |||||||||
Sbjct 596 GTGTGTTTTAATTGTGTTTTGACGCTTGGATAAGAAGTACTTATGATGTGTAGTTTATGT 655
Query 750 TTTTTCAAGTTATGTAATAATGTAATTCCTATCCATCTGACAAACGAACGAATCTTGTGT 809
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 656 TTTTCCAAGTTATGTAATAATGTAATTC-TATCCATCTGACAAACGAACGAATCTTGTGT 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5