BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04570.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919141 jgi|Araly1|919141|scaffold_100422.1 2678 0.0
> Ahg919141 jgi|Araly1|919141|scaffold_100422.1
Length=1669
Score = 2678 bits (1450), Expect = 0.0
Identities = 1602/1675 (96%), Gaps = 11/1675 (1%)
Strand=Plus/Plus
Query 156 GTTTTCATCTCTCTGAAACAATGGAAAGAATTATGATAAATCCATTGTTATCAATTCAAA 215
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1 GTTTTCATCTCCCTGAAACAATGGAAAGAATCATGATAAATCCATTGTTCTCAATCCAAA 60
Query 216 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGC-AACAACAACAA 274
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
Sbjct 61 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGCGAA-AGCAACTA 119
Query 275 CAAGAGAGGCAGAGCAATAACAATACCCTTTTCATGGGGGA-AGCCAGACCAAGAAGAGC 333
|||||||||| |||||||||||||||||| ||||||| ||| | ||| ||||||||| ||
Sbjct 120 CAAGAGAGGCGGAGCAATAACAATACCCTATTCATGGTGGATA-CCAAACCAAGAAGGGC 178
Query 334 GACCACATTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 393
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACGACACTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 238
Query 394 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGCGGGTT 453
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGTGGGTT 298
Query 454 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCACTTAACTTCCATATGGT 513
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCTCTTAACTTCCATATGGT 358
Query 514 TCATAGCCTCGCACTCCAACCATCGACGCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 573
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 359 TCATAGCCTCGCACTCCAACCATCCACTCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 418
Query 574 CATGGTGGCTAAACCTCTCTACGGTGTGCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 633
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 CATGGTGGCTAAACCTCTCTACGGTGTTCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 478
Query 634 TAGAGTTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 693
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGAATTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 538
Query 694 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATGTGTCCTGCTTAGTAA 753
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 539 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATTTGTCCTGCTTAGCAA 598
Query 754 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATACGGTCTGAG 813
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATATGGTCTGAG 658
Query 814 ATACCGAATAAACGGTCTCCAGTCTTAT-GCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 872
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 659 ATACCAAATAAACGGTCTCCAGTCTT-TCGCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 717
Query 873 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 777
Query 933 TATTCTCTGCTTTGTTGTCTCTGCAGCTCGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 992
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 TATTCGCTGGTTTGTTGTCTCTGCAGCTTGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 837
Query 993 TCGGCTTACCACGGATAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAGAAACAGATAT 1052
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 TCGGCCTACCACGGTTAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAAAAACAGATAT 897
Query 1053 CGAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTGATTTGGGCAGTAG 1112
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 CAAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTTATTTGGGCAGTAG 957
Query 1113 TATCCATTGCAATGGTCCCTCTTCTCTCAGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1172
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 TATCCATTGCAATGGTCCCTCTTCTCTCGGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1017
Query 1173 TGAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATTGGACAGTTGATGCTTCTTT 1232
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1018 TAAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATAGGACAATTGATGCTTCTTT 1077
Query 1233 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1137
Query 1293 TCATCCAACTCTTGTACGGTTTATCGATTCTCCTCGA-TTACATCTTGGTGAAGCAAATA 1351
|||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1138 TCATCCAACTCTTGTACGGTCTATCGATTCTCCTCGACTTT-ATCTTGGTGAAGCAAATA 1196
Query 1352 AATCTCGGATTTGGAATCTCCAACGAGGTTTATGTGCTGTGTTTTTCCAGCCTAGCAGAA 1411
||||||||||||||||||||||| ||| |||||||| ||||||| |||||| ||||||||
Sbjct 1197 AATCTCGGATTTGGAATCTCCAATGAGATTTATGTGTTGTGTTTCTCCAGCTTAGCAGAA 1256
Query 1412 ATCCTAGCACAGTTTAAGATCCTTCCATTTGCAGTCAGATTAGCAAGTATGTGTCCACAG 1471
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1257 ATCCTTGCACAGTTTAAGATCCTTCCGTTTGCAGTCAGATTAGCCAGTATGTGTCCACAG 1316
Query 1472 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1376
Query 1532 AGTGCATTCTTAGGCGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1591
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGCGCATTCTTAGGGGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1436
Query 1592 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTCTGGCACCTTTGTGCTTCATG 1651
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1437 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTTTGATGCCTTTGTGCTTCATG 1496
Query 1652 CACCTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAGGCAAGAGAGGTATTAGTAAG 1711
||| ||||||||||||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 1497 CACTTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAAGAAAAAGAGGTATAAGTAAG 1556
Query 1712 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAGTGTT-ACTTACCG 1770
|||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||
Sbjct 1557 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAATGTTGAAT-ATCG 1615
Query 1771 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGGTAGTGTAAAGTATAGTTACATCAC 1825
|||||||||||||||||||||||||||||| ||||| || ||||||||| |||||
Sbjct 1616 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGATAGTGCAA-GTATAGTTAAATCAC 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5