BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04590.2
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919143 jgi|Araly1|919143|scaffold_100424.1 1722 0.0
> Ahg919143 jgi|Araly1|919143|scaffold_100424.1
Length=1229
Score = 1722 bits (932), Expect = 0.0
Identities = 1109/1191 (93%), Gaps = 26/1191 (2%)
Strand=Plus/Plus
Query 6 CCGTCTCCAAT---GGCGGGTTTCAGTTCTCTAATTCCTAGAACGCTTCTGAAACGCGCC 62
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 12 CCGTCTCCAATGGCGGCGGGTTTCAGTTCTCTAATTCCGAGAACGCCTCTGAAACGCGCC 71
Query 63 GTTAGTAGCGCAACAAGAAATCTAACGGCGCCGTTAGCTTCTATTTCAG-CAGCAAGAAA 121
|||||||| ||||| || | |||||||||||||||||||||||||| | ||||||||||
Sbjct 72 GTTAGTAGTGCAACCGGATACCTAACGGCGCCGTTAGCTTCTATTTC-GACAGCAAGAAA 130
Query 122 TCTCTTCATTGGAGGAGGATGTGACGAAAATTATGGTGAGCCAGGAGTGTTTTCTCATTC 181
||||||| |||||||| ||||||||| | ||||||||||||||||| |||| |||||||
Sbjct 131 TCTCTTCGCTGGAGGAGCATGTGACGAGATTTATGGTGAGCCAGGAGGGTTTCCTCATTC 190
Query 182 CAATGGAATAAGAAAGTACAACACCGTTGGTAATGCTGGCGCACTAACTGGTCCATTTCA 241
|| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 191 CAGTGGAATAAGAAGGTACAACACCGTTGGTAATTCTGCCGCACTAACTGGTCCATTTCA 250
Query 242 TCATCTTCTTGGGGTCAACCAGACAAACAAGCCCGCCTTTTTAAGGGTCCAATCTATGAG 301
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 251 TCATCTTCTTAGGGTCAACCAGACAAACAAGCCCGCCTTTTTAAGGGTCCAATCGATGAG 310
Query 302 CTATCAGTTTGTCGCTGATTCTCATTCATCTCCTAAACGTATTGTGAAGAATGAGGATGA 361
|||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 311 CTATCAGTTTGTGGCTGATTCTCATACATCTCCTAAACGTATTGTGAAGACTGAGGATGA 370
Query 362 GGAAGATTTTTCTGATTCATCAAAGAAGGGAAACGCTGAAAACCCTAGGAAACATCAAAT 421
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 371 GGAAGATTTTTCTGATTCATCAAAGAAGGAAAACGCTGAAACCCCTAGGAAACATCAAAT 430
Query 422 TGGGGAGAACATACCCAAGAAGGATAAAATAAAGTTTCTTGTGAACACTCTTCTTGATAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 TGGGGAGAACATACCCAAGAAGGATAAAATAAAGTTTCTTGTGAACACTCTTCTTGACAT 490
Query 482 TGAAGATAATAAAGAGGCTGTTTATGGAGCTCTGGATGCTTGGGTTGCTTGGGAGCGCAA 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GGAAGATAATAAAGAGGCTGTTTATGGAGCTCTGGATGCTTGGGTTGCTTGGGAGCGCAA 550
Query 542 TTTCCCCATTGCTTCCCTCAAAATAGTAATAGCTAGTCTTGAAAAGGAACATCAATGGCA 601
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 551 TTTCCCCATTGCTTCCCTAAAAAGAGTAATAGCTATTCTTGAAAAGGAACATCAATGGCA 610
Query 602 TCGAATGGTCCAGGTGATAAAGTGGATCCTAAGTAAGGGACAAGGGAACACGATGGGGAC 661
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TCGAATGATCCAGGTGATAAAGTGGATCCTAAGTAAGGGACAAGGGAACACGATGGGGAC 670
Query 662 GTACGGACAGTTGATACGGGCGTTAGATATGGATCGTAGAGCAGAAGAGGCTCATGTTAT 721
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 671 GTATGGACAGTTGATACGGGCATTAGATATGGATCGTAGAGCAGAAGAGGCTCATGTTAT 730
Query 722 CTGGCGAAAGAAAGTTGGGAACGATCTGCATTCTGTGCCTTGGCAATTATGCTTACAAAT 781
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CTGGCGAAAGAAAATTGGGAACGATCTGCATTCTGTGCCTTGGCAATTATGCTTACAAAT 790
Query 782 GATGCGCATATATTTCCGGAACAACATGTTACAGGAACTTGTTAAGGTTATGAAGCTATT 841
||||||||||||||||||||||||||||||||| |||||||||||| | || | |
Sbjct 791 GATGCGCATATATTTCCGGAACAACATGTTACAAGAACTTGTTAAGCT-AT-----T-T- 842
Query 842 CAAGGATCTGGAGAGTTATGACCGTAAGCCTCCGGACAAGCACATTGTGCAGACCGTGGC 901
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 -AAGGATCTGGAGAGTTATGACCGTAAGCCTCCGGACAAGCACATAGTGCAGACCGTGGC 901
Query 902 TGATGCTTATGAGCTTTTGGGAATGCTTGATGAGAAAGAACGGGTAGTGACGAAGTATAG 961
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 TGATACTTATGAGCTTTTAGGAATGCTTGATGAGAAAGAACGGGTAATGACGAAGTATAG 961
Query 962 CCATCTTTTACTTGGTACACCATCCGATGATAAACCAAGTAGATCTTCGAGGAAGAAGAA 1021
||| ||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 962 CCACCTTTTACTTGGTACAGCATCCGATGATAAACAAAGAAGATCCTCGAGGAAGAAAAA 1021
Query 1022 GAAACCAGAACTGAGGATTCCAGAAGCAACGACAGAAGGCGCAGTTGATGCAGCAAAAGC 1081
||||||||||||||||||||| |||||||||||||||| |||| | || ||| ||
Sbjct 1022 GAAACCAGAACTGAGGATTCCTGAAGCAACGACAGAAGACGCA----A--CA--AAA-GC 1072
Query 1082 TGAAATCCAAGAAGAGCGAAAAGAAAATCTGGATAATCACCAAGAATCAGAAGCTGCCAC 1141
||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1073 TGAGTTACAAGAAGAGCTAAAAGAAAATCTGGATAATCACCAAGAATCAGAAGCTACCAC 1132
Query 1142 TGAAAAACAATTCGAACATGGAGCGT-AAGTTGTAGTATTTAAT-CGATAA 1190
||| ||||||| |||||||||||||| || |||||||||| ||| ||||||
Sbjct 1133 TGAGAAACAATCCGAACATGGAGCGTTAATTTGTAGTATT-AATTCGATAA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5