BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04610.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470444 jgi|Araly1|470444|fgenesh2_kg.1__398__AT1G04610.1 2663 0.0
> Ahg470444 jgi|Araly1|470444|fgenesh2_kg.1__398__AT1G04610.1
Length=1699
Score = 2663 bits (1442), Expect = 0.0
Identities = 1637/1726 (95%), Gaps = 33/1726 (2%)
Strand=Plus/Plus
Query 1 ACACACATACACTTACATCTCCATCCtcttgtcttaaaaagtttccaaaatctttctttt 60
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||
Sbjct 1 ACACACATACACTTACATCTCCATCCTCTTGTCCTAAAAAGCTTCCCAAATCTTTTTTTT 60
Query 61 ttcttcttctacattcttaaaatttcttctgttttctCCTCACAACCAGACAAGCAAACT 120
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTCTTCTACAATCTCAAAATTTCTTCTGTTTTCTCCTCACAACCAGACAAGCAAACT 120
Query 121 CTAAACTCTGTGGAAGATGTATGGAAATAATAACAAGAAGTCTATCAACATCACGAGTAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTAAACTCTGTGGAAGATGTATGGAAATAATAACAAGAAGTCTATCAACATCTCGAGTAT 180
Query 181 GTTTCAAAACCTCATCCCCGAAGGCAGCGACATTTTCTCCCGGCGTTGCATCTGGGTCAA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTCAAAACCTCATCCCCGACGGCAGCGACATTTTCTCCCGGCGTTGCATCTGGGTCAA 240
Query 241 TGGACCCGTCATCGTCGGAGCTGGCCCATCAGGTCTAGCCGTTGCTGCGGGCTTGAAACG 300
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CGGACCGGTCATCGTTGGAGCTGGCCCATCAGGTCTAGCCGTTGCTGCGGGATTGAAACG 300
Query 301 TGAAGGGGTACCATTCATAATCCTCGAGCGAGCTAACTGCATTGCTTCATTATGGCAAAA 360
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAGGAGTACCGTTCATAATCCTCGAGCGAGCTAACTGCATTGCTTCATTATGGCAAAA 360
Query 361 CAGAACCTACGATCGTCTCAAACTCCATCTACCTAAACAGTTTTGCCAATTACCCAATTA 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CAGAACCTACGATCGTCTCAAACTCCATCTCCCTAAACAGTTTTGCCAATTACCCAATTA 420
Query 421 TCCTTTCCCGGACGAGTTCCCTGAGTACCCTACCAAGTTTCAGTTTATTCAGTACCTTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCTTTCCCGGACGAGTTCCCTGAGTACCCTACCAAGTTTCAGTTTATTCAGTACCTTGA 480
Query 481 GTCCTACGCAGCCAACTTTGACATCAACCCTAAGTTCAACGAGACAGTCCAGTCCGCTAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GTCCTACGCAGCCAACTTTGACATCAACCCTAAGTTCAACGAGACAGTCCAGTCCGCAAA 540
Query 541 ATATGATGAGACGTTCGGGCTGTGGCGGGTTAAGACCATTTCAAACATGGGTCAGCTCGG 600
||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 541 ATACGACGAGACGTTCGGGCTGTGGCGGGTTAAGACCATTTCGAAGATGGGTCAGCTCGG 600
Query 601 TTCTTGCGAGTTTGAGTATATATGCAGATGGATTGTGGTGGCAACGGGAGAGAACGCTGA 660
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct 601 TTCTTGCGAGTTTGAGTATATCTGCAGGTGGATTGTGGTGGCCACGGGAGAGAATGCTGA 660
Query 661 GAAAGTTGTGCCGGATTTTGAAGGTCTAGAGGATTTTGGCGGCGATGTTCTCCATGCTGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAAGTTGTGCCGGATTTTGAAGGTCTAGAGGATTTTGGCGGCGATGTTCTCCATGCTGG 720
Query 721 TGACTATAAATCCGGTGGAAGGTACCAAGGGAAAAAGGTTTTGGTGGTGGGATGTGGAAA 780
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 TGACTATAAATCTGGTGGAAGGTACGAAGGGAAAAAGGTTTTGGTGGTGGGATGTGGAAA 780
Query 781 CTCCGGTATGGAAGTCTCTCTCGATCTCTACAATCACGGAGCAAACCCATCGATGGTCGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 CTCCGGTATGGAAGTCTCTCTCGATCTCTACAATCACGGAGCAAACCCATCAATGGTCGT 840
Query 841 TCGTAGCGCTGTTCATGTTTTACCAAGAGAGATTTTTGGGAAATCAACGTTTGAATTAGG 900
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCGTAGCGCTGTGCATGTTTTACCAAGAGAGATTTTTGGGAAATCAACGTTTGAATTAGG 900
Query 901 AGTTACGATGATGAAGTATATGCCCGTTTGGCTCGCGGACAAGACTATACTCTTTCTGGC 960
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 901 AGTTACGATGATGAAGTATATGCCAGTTTGGCTCGCGGACAAGACCATACTCTTTCTAGC 960
Query 961 GAGGATTATCTTGGGGAATACCGATAAATACGGTCTAAAAAGGCCGAAAATTGGACCGTT 1020
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGGATGATTTTAGGGAATACCGATAAATACGGTCTAAAAAGGCCGAAAATTGGACCGTT 1020
Query 1021 AGAGCTAAAGAACAAGGAAGGCAAAACTCCGGTTCTTGACATCGGAGCGTTACCCAAAAT 1080
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1021 AGAGCTAAAGAACAAGGAAGGGAAAACTCCAGTACTTGACATCGGAGCGTTACCCAAAAT 1080
Query 1081 CAGATCGGGAAAGATCAAAATCGTCCCCGGAATCATAAAGTTCGGCAAAGGCAAAGTTGA 1140
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1081 CAGATCGGGAAAGATCAAAATCGTCCCCGGAATCATAAAGTTCGGTGAAGGAAAAGTTGA 1140
Query 1141 GCTAATAGATGGCCGTGTTCTTGAGATTGATTCCGTTATTCTAGCTACTGGATACAGAAG 1200
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 ACTAGTGGATGGCCGTGTTCTTGAGATTGATTCCGTTATTCTAGCTACCGGATACAGAAG 1200
Query 1201 CAACGTCCCTTCATGGCTTAAGGACAACGACTTCTTCTCCGATGATGGGATACCAAAAAA 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CAACGTCCCTTCATGGCTTAAGGACAATGACTTCTTCTCCGATGATGGGATACCAAAAAA 1260
Query 1261 CCCGTTTCCAAACGGATGGAAAGGAGAGGCGGGATTGTATGCGGTAGGGTTCACGAGAAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCCGTTTCCAAACGGATGGAAAGGAGAGGCGGGATTGTATGCGGTAGGGTTCACGAGAAA 1320
Query 1321 AGGATTGTTTGGTGCGTCGCTTGATGCTATGAGTGTGGCTCATGATATTGCTAATAGGTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGATTGTTTGGTGCGTCGCTTGATGCTATGAGTGTGGCTCATGATATTGCTAATAGGTG 1380
Query 1381 GAAAGAAGAGTCTAAGCAACAGAAGAAAACTGCTGCTGCTCGTCATCGTCGTTGTATTTC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GAAAGAAGAGTCTAAGCAACAGAAGAAAACTGCTGCTGCTCGTCATCGTCGATGTATTTC 1440
Query 1441 ACATTTCTAA-TCATCATTATCAAATTTAGGGaaaaaaatattcaaaaaaaGAAGAAGAT 1499
|||||||||| | |||| ||||||||||||||| | || | |
Sbjct 1441 ACATTTCTAACT-ATCAAAATCAAATTTAGGGAAGA---TA---A--------------T 1479
Query 1500 AATTAAGCCCTCTCCTCGGAAGAAAA-TACCCCCaaaaaa-aagagaattgtgaaaagaa 1557
| ||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1480 --T-AAGCCCTCTCCTCAGAAGAAAAATACCCC-AAAAAATAAGAGAATTGTGAAAAGAA 1535
Query 1558 aaaaaTAAT-AGGGGGAtttttctttgtttttttaggaagatgtggcttttttatgta-t 1615
|| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1536 AATAA-AATTAGGGGGATTTTTCTTTGTTTTTT-AGGAAGATGTGGCTTTTTTATGTAAT 1593
Query 1616 ttttattttaagagtgctttattttgttgttgtattttttttaa-atcttcattttagat 1674
||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct 1594 TTTTATTGTAAGAGTGCTTTTTTTTGTTCTTGTATTTTTTTTTCTATCTTCATTTTAGAT 1653
Query 1675 tttGAACTCTTGTAAGAAGTTTTGCTTAATCTAATATGACAAATAT 1720
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 TTTGAACTCTTGTAAGAAGTTTTGCTTAATCTAATATGACAAATAT 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5