BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04620.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470445 jgi|Araly1|470445|fgenesh2_kg.1__399__AT1G04620.1 2562 0.0
> Ahg470445 jgi|Araly1|470445|fgenesh2_kg.1__399__AT1G04620.1
Length=1551
Score = 2562 bits (1387), Expect = 0.0
Identities = 1503/1558 (96%), Gaps = 12/1558 (1%)
Strand=Plus/Plus
Query 57 tct-tctct-tcttctcttcttctctGGCTGGGCAACCATGATTACTGTCGTCACCTCCA 114
||| ||||| || |||| || ||||| |||| |||||||||||||| | ||||||||||
Sbjct 1 TCTCTCTCTCTCCTCTCGTC-TCTCTCGCTGAGCAACCATGATTAC--T-GTCACCTCCA 56
Query 115 GGCTCTCTCTCCTTCCTCCAGT-CTTCTCCGTCGTTAACTCTTCTTCTTCGCGTTCCAAA 173
||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct 57 AGCTCTCTCTCCTTCCTCCA-TGCTTCTCTGTCGTTAACTCTTCATCTTCGCGTTCCAAA 115
Query 174 GATATGAAT-CTAGAGCCAAAAAAGAAGGTTAAATTAAGAGAAGACTGGAGAGAAAAGTC 232
||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 116 GATATGAATAC-AGAGCCAAAAAAGAAAGTTAAACTAAGAGAAGACTGGAGAGAAAAGTC 174
Query 233 CAGACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTCAG-TGCGGGC 291
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 175 CAAACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTC-GATGCGGGT 233
Query 292 TATGCGACACCTACTACATTGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 351
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TATGCGACACCTATTACATCGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 293
Query 352 TGTCAAGGATTGAGAGCTTGGAACCTGTTGTGCATGGTAGAGGAAGGAAAGCAGATTCCT 411
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 294 TGTCAAGGATTGAGAGCTTGGAGCCTGTTGTGCATGGTCGAGGAAGGAAACCAGATTCCT 353
Query 412 TACAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TAGAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 413
Query 472 TCGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 531
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 473
Query 532 ATATGGTTGAAGCTGTCGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 591
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACATGGTTGAGGCTGTTGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 533
Query 592 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 593
Query 652 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAGCGTCTTCTGTTTT 711
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 594 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAACGTCTTCTGTTTT 653
Query 712 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAAA 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 654 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAGA 713
Query 772 AGTTGTATGTACTAGGCACCAATTGTGTGGACAACGGAACACGAGATGGACTAGACAAGT 831
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 714 AGTTGTATGTACTAGGCACCAATTGTGTGGACAATGGAACACGAGATGGACTAGACAAGT 773
Query 832 TTCTGAAAGCAGCTAGTAAAGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 891
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTCTGAAAGCGGCTAGTAAGGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 833
Query 892 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 893
Query 952 CTGCAAACGATTTAGTAGATGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 1011
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAGCAAACGATTTAGTAGACGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 953
Query 1012 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAAGTATTCAGGTCTGAACA 1071
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAGGTATTCAGGTCTGAACA 1013
Query 1072 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGTGGGAAAGAAATGCTCAGCT 1131
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGCGGGAAAGAAATGCTCAGCT 1073
Query 1132 TGGTAGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1191
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGGTTGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1133
Query 1192 TGACAGAAACTGTTAAGGCAGACGATGCTGCTAAGTTTGGTCAAGGTCCTGCTCAGCCAG 1251
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1134 TGACAGAAACTGTTAAGGCAGACGATGATGCTAAGTTTGGTCGAGGTCCTGCTCAGCCAG 1193
Query 1252 CGCCACTATTTGTTGGAAACATTATTGCGTTCATCCTAAATTTGGTTGGTCCTAAGGGTC 1311
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 CGCCAATATTTGTTGGAAACATTATTGCGTTCATCCTAAGTTTGGTTGGTCCTAAGGGTC 1253
Query 1312 TAGAATTTGCTCGGTACTCGTTGGACTACCATACCATCAGAAACTATTTGTACGTAAACC 1371
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1254 TAGAATTCGCTCGGTACTCATTGGACTACCATACCATCAGAAACTATTTGCACGTAAACC 1313
Query 1372 GCAAATGGGGAAAGCAAAGAGCAAACACCCACATGCCATCATATGCCAAAAAGATAGTGG 1431
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1314 GCAAATGGGGAAAGCAAAGAGCCAACAGCCACATGCCATCATATGCCAAAAAGATAGTGG 1373
Query 1432 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1433
Query 1492 CCTTTCTCATGTAAGTTTCCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1551
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CCTTTCTCATGTAAGTTTGCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1493
Query 1552 GTCCTACTGTTTCTCAACTTGTAGTATGTTAGTAATATCCAAAACTATTTCCCTCGTG 1609
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 GTCCTACTCTTTCTCAACTTGTAGTATGATAGTAATATCCAAAACTATTTCCCTCGTG 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5