BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04630.1
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470446 jgi|Araly1|470446|fgenesh2_kg.1__400__AT1G04630.1 1046 0.0
Ahg482258 jgi|Araly1|482258|fgenesh2_kg.4__1318__AT2G33220.1 531 4e-150
> Ahg470446 jgi|Araly1|470446|fgenesh2_kg.1__400__AT1G04630.1
Length=677
Score = 1046 bits (566), Expect = 0.0
Identities = 642/677 (95%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 28 GTTGTTCATCGGAATCCCTAGAACACTCGATTTCAGC-AAAATC-AAATCGGATTCAGTG 85
|||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 3 GTTGTTCATCGGGATCCCTAGAACACTCGATTTCAGCAAAAATCAAAATCGGATTCAGTG 62
Query 86 ATCAAAAGTCAATTTGGTCGAGAAGAAATTGAGCGTTGAAGATGACGGAGGCGATGATAA 145
||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 63 ATC-AGAGTAAATTTGGTCGAGAAGAAATTGAGCGTTGAAGATGACGGAGGCGGTGATTA 121
Query 146 GAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGCTGCTTCAGGATGGTCCGCCAC 205
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 122 GGAATAAGCCAGGAATGGCGAGTGTGAAGGACATGCCGCTGCTTCAGGATGGTCCGCCAC 181
Query 206 CGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGATATCCAATACGGGTCCTAGTGCAA 265
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 182 CGGGTGGGTTCGCACCGGTCCGATATGCTCGCCGGATATCCAACACGGGTCCTAGTGCTA 241
Query 266 TGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGG 325
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGGCCATTTTCCTAACCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGG 301
Query 326 GAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAACAATACTTC 385
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 302 GAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAGCAATACTTC 361
Query 386 CCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAAAAGTATCTGGAAT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAAAAGTATCTGGAAT 421
Query 446 ATGAGGCTGATGTAATGAAAGATGTTCCGGGATGGAAAGTTGGCGAGAATGTGTACAATT 505
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 ATGAGGCTGATGTAATGAAGGATGTTCCGGGATGGAAAGTTGGTGAGAATGTGTACAATT 481
Query 506 CTGGTCGCTGGATGCCTCCGGCTACTGGGGAACTCCGTCCTGATGTGTGGTGATT-TCCT 564
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
Sbjct 482 CTGGTCGCTGGATGCCACCGGCTACTGGGGAACTCCGTCCTGATGTCTGGTGATTCTG-T 540
Query 565 AGTTTCTCTCAAATGCA--T-ATGATGATGA-TGAATGA-TGTTTCGCTGAGGATTGATA 619
||||||||||| ||||| | |||||||||| ||||||| ||||||| |||||||||| |
Sbjct 541 AGTTTCTCTCAGATGCAAATGATGATGATGAATGAATGAATGTTTCGTTGAGGATTGACA 600
Query 620 TGTTCTTGTTATATCttttttt-CTTCGGGTAATAAGAGAATGATTCAACAGACAGTATT 678
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 601 TGTTCTTGTTATATCTTTTTTTTCATCGGGTAATAAGAGAATGATTCAACATACAGTATT 660
Query 679 CTTCTTGTATTGGTTTT 695
|||||||||||||||||
Sbjct 661 CTTCTTGTATTGGTTTT 677
> Ahg482258 jgi|Araly1|482258|fgenesh2_kg.4__1318__AT2G33220.1
Length=739
Score = 531 bits (287), Expect = 4e-150
Identities = 385/434 (89%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 123 GAAGATGACGGAGGCGATGATAAGAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 182
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 104 GAAAATGACGGAGGCGATGATAAGGAAGAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 163
Query 183 GCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGAT 242
| |||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct 164 GTTGCTTCAGGATGGTCCACCACCGGGTGGATTCGCGCCGGTCCGATATGCTCGTCGGAT 223
Query 243 ATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTG 302
||||| |||||||| || || ||||| || |||||| ||||||| ||||| ||||||||
Sbjct 224 CTCCAACACGGGTCCAAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTG 283
Query 303 GGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATA 362
||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 284 GGGCATGTACCAAGTCGGTCAGGGCAACAAAATCCGCAGGGCGTTGAAGGAAGAGAAATA 343
Query 363 TGCTGCTCGTAGAACAATACTTCCCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTC 422
||||| |||||| |||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 344 CGCTGCCCGTAGAGCAATTCTACCGATTCTTCAAGCTGAAGAAGATGAAAGGTTTGTGTC 403
Query 423 TGAGTGGAAAAAGTATCTGGAATATGAGGCTGATGTAATGAAAGATGTTCCGGGATGGAA 482
||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct 404 TGAGTGGAACAAGTATCTAGAATACGAGGCGGATGTGATGAAGGATGTTCCTGGATGGAA 463
Query 483 AGTTGGCGAGAATGTGTACAATTCTGGTCGCTGGATGCCTCCGGCTACTGGGGAACTCCG 542
||| || || || || |||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 464 AGTCGGTGAAAACGTATACAATTCTGGTCGTTGGATGCCTCCAGCTACTGGAGAGCTTCG 523
Query 543 TCCTGATGTGTGGT 556
||||||||| ||||
Sbjct 524 TCCTGATGTCTGGT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27448500240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5