BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04640.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg311551 jgi|Araly1|311551|fgenesh1_pm.C_scaffold_1000331 1195 0.0 Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 496 2e-139 Ahg353398 jgi|Araly1|353398|fgenesh1_pg.C_scaffold_7000571 268 4e-71 > Ahg311551 jgi|Araly1|311551|fgenesh1_pm.C_scaffold_1000331 Length=1002 Score = 1195 bits (647), Expect = 0.0 Identities = 691/713 (97%), Gaps = 0/713 (0%) Strand=Plus/Plus Query 75 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 349 Query 135 AATCCCTTAAACTGCAGGAGAAATTAGTTTCAGAGAGAAAAGCTCATCAGATTCCAGATA 194 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 350 AATCCCTTAAACTGCAAGAGAAATTAGTTTCAGAGAGAAAAGCTCATCATATTCCAGATA 409 Query 195 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 469 Query 255 ATCTACTTATCCCTGAATCTGAACTTACAAAAATCGGAGCTGAACTTCATTATACTCAAA 314 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 470 ATCTACTGATCCCTGAATCTGAACTTACAAAAATTGGAGCTGAACTTCATTATACTCAAA 529 Query 315 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCCT 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 530 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCTT 589 Query 375 TACGCAGCATTGGTTTTGGTGCTAGGAACTACGTGGAGACATTGGAGCGGTCAATGATCG 434 |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 590 TACGCAGCATCGGTTTTGGTGCTAGGAACTATGTGGAGACATTGGAGAGGTCAATGATCG 649 Query 435 AGTTTGCTTCGATTTATGGCGTGAAAGCTCGAGCAGGAAACAAATGTGAGACTGGGGTTT 494 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 650 AATTTGCTTCGATTTATGGCGTGAAAGCTCGTGCAGGAAACAAATGTGAGACTGGGGTTT 709 Query 495 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTAGGATATCTTCTGGAATCACTAGTC 554 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 710 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTCGGATATCTTCTGGAATAACTAGTC 769 Query 555 ATGGTTTGGCCTTAAATATAGATCCTGATATGAAGTACTTTGAGCACATTGTGCCTTGTG 614 ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| Sbjct 770 ATGGTTTGGCCTTTAACATAGATCCTGATTTGAAGTACTTTGAGCACATTGTGCCTTGTG 829 Query 615 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTCTGCTTCCTTCAG 674 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 830 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACAGACACTCTGCTTCCTTCAG 889 Query 675 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTTCTTATGATGATG 734 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 890 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTTCTTATGATGATG 949 Query 735 TTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAGAATAA 787 |||| |||||||||||||||||| |||||||||||||||||| | |||||||| Sbjct 950 TTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGCTGAAGAATAA 1002 > Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 Length=1254 Score = 496 bits (268), Expect = 2e-139 Identities = 360/404 (89%), Gaps = 7/404 (2%) Strand=Plus/Plus Query 408 TGGAGACATTGGAGCGGTCAATGATC-GAGTTTGCTTCGATTTATGGCGTGAAAGCTCGA 466 ||| |||||||| ||||||| | ||| || |||||||| |||||||||||||||||||| Sbjct 855 TGG-GACATTGGTGCGGTCACTCATCGGA-TTTGCTTCTATTTATGGCGTGAAAGCTCGT 912 Query 467 GCAGGAAACAAATGTGAGACTGGGGTTTGGGTTGGGGATAGGAAGATCGGTGCTATTGGG 526 || |||||| ||| ||| ||||||||||||||||| ||||| ||||| | |||||||||| Sbjct 913 GCGGGAAACGAATATGATACTGGGGTTTGGGTTGGTGATAGAAAGATTGCTGCTATTGGG 972 Query 527 GTTAGGATATCTTCTGGAATCACTAGTCATGGTTTGGCCTTAAATATAGATCCTGATATG 586 ||| | |||||||||||||||||| |||||||||||||||| || ||| |||||||| || Sbjct 973 GTTCGAATATCTTCTGGAATCACTTGTCATGGTTTGGCCTTTAACATATATCCTGATTTG 1032 Query 587 AAGTACTTTGAGCACATTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGA 646 || ||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||| Sbjct 1033 AAATACTTTGAGCACATTGTACCTTATGGGATTCCTGATAAACAAGTTACATCGTTGCGA 1092 Query 647 AGAGAGACGGATA-CTCTGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTG 705 | ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1093 AAAGAGACGGATACCT-TGCTTCCTTCAGAAGAAGTGATTCATGAGCAGTTGGTTTCTTG 1151 Query 706 TTTAGCCAAAGCGTTTTCTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTT 765 ||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| Sbjct 1152 TTTAGCCAAAGTGTTTTCTTATGATGATATTGTGTGGAAGGAAGATCCTTCAGTCATTTT 1211 Query 766 GGACACCCAAGATAAAGAATAATC-CGGTTTGATCCGGTTTTGA 808 || ||||| |||||| |||| || |||||||||| |||||||| Sbjct 1212 GGTCACCCCAGATAACGAATT-TCTCGGTTTGATCAGGTTTTGA 1254 > Ahg353398 jgi|Araly1|353398|fgenesh1_pg.C_scaffold_7000571 Length=1353 Score = 268 bits (145), Expect = 4e-71 Identities = 215/245 (88%), Gaps = 20/245 (8%) Strand=Plus/Plus Query 544 AATCACTAGTCATGGTTTGGCCT-TAAATATAGATCCTGATATGAAGTACTTTGAGCACA 602 ||| ||||||||||||||||||| | || |||||||||||| |||||| ||||||||||| Sbjct 1128 AATAACTAGTCATGGTTTGGCCTGT-AACATAGATCCTGATTTGAAGTCCTTTGAGCACA 1186 Query 603 TTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTC 662 ||||||| |||||||||||||||||||||| | | ||| |||| |||| Sbjct 1187 TTGTGCCGTGTGGGATTGCTGATAAAGAAG----A-------G-AGACAGAC----ACTC 1230 Query 663 TGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTT 722 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1231 TGCTT-C-TCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTT 1288 Query 723 CTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAG 782 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | Sbjct 1289 CTTATGATGATGTTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGATAACG 1348 Query 783 AATAA 787 ||||| Sbjct 1349 AATAA 1353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5