BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04640.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311551 jgi|Araly1|311551|fgenesh1_pm.C_scaffold_1000331 1195 0.0
Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727 496 2e-139
Ahg353398 jgi|Araly1|353398|fgenesh1_pg.C_scaffold_7000571 268 4e-71
> Ahg311551 jgi|Araly1|311551|fgenesh1_pm.C_scaffold_1000331
Length=1002
Score = 1195 bits (647), Expect = 0.0
Identities = 691/713 (97%), Gaps = 0/713 (0%)
Strand=Plus/Plus
Query 75 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 349
Query 135 AATCCCTTAAACTGCAGGAGAAATTAGTTTCAGAGAGAAAAGCTCATCAGATTCCAGATA 194
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 350 AATCCCTTAAACTGCAAGAGAAATTAGTTTCAGAGAGAAAAGCTCATCATATTCCAGATA 409
Query 195 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 469
Query 255 ATCTACTTATCCCTGAATCTGAACTTACAAAAATCGGAGCTGAACTTCATTATACTCAAA 314
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 470 ATCTACTGATCCCTGAATCTGAACTTACAAAAATTGGAGCTGAACTTCATTATACTCAAA 529
Query 315 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCCT 374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 530 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCTT 589
Query 375 TACGCAGCATTGGTTTTGGTGCTAGGAACTACGTGGAGACATTGGAGCGGTCAATGATCG 434
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 590 TACGCAGCATCGGTTTTGGTGCTAGGAACTATGTGGAGACATTGGAGAGGTCAATGATCG 649
Query 435 AGTTTGCTTCGATTTATGGCGTGAAAGCTCGAGCAGGAAACAAATGTGAGACTGGGGTTT 494
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 650 AATTTGCTTCGATTTATGGCGTGAAAGCTCGTGCAGGAAACAAATGTGAGACTGGGGTTT 709
Query 495 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTAGGATATCTTCTGGAATCACTAGTC 554
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 710 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTCGGATATCTTCTGGAATAACTAGTC 769
Query 555 ATGGTTTGGCCTTAAATATAGATCCTGATATGAAGTACTTTGAGCACATTGTGCCTTGTG 614
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 770 ATGGTTTGGCCTTTAACATAGATCCTGATTTGAAGTACTTTGAGCACATTGTGCCTTGTG 829
Query 615 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTCTGCTTCCTTCAG 674
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 830 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACAGACACTCTGCTTCCTTCAG 889
Query 675 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTTCTTATGATGATG 734
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 890 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTTCTTATGATGATG 949
Query 735 TTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAGAATAA 787
|||| |||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 950 TTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGCTGAAGAATAA 1002
> Ahg338628 jgi|Araly1|338628|fgenesh1_pg.C_scaffold_2000727
Length=1254
Score = 496 bits (268), Expect = 2e-139
Identities = 360/404 (89%), Gaps = 7/404 (2%)
Strand=Plus/Plus
Query 408 TGGAGACATTGGAGCGGTCAATGATC-GAGTTTGCTTCGATTTATGGCGTGAAAGCTCGA 466
||| |||||||| ||||||| | ||| || |||||||| ||||||||||||||||||||
Sbjct 855 TGG-GACATTGGTGCGGTCACTCATCGGA-TTTGCTTCTATTTATGGCGTGAAAGCTCGT 912
Query 467 GCAGGAAACAAATGTGAGACTGGGGTTTGGGTTGGGGATAGGAAGATCGGTGCTATTGGG 526
|| |||||| ||| ||| ||||||||||||||||| ||||| ||||| | ||||||||||
Sbjct 913 GCGGGAAACGAATATGATACTGGGGTTTGGGTTGGTGATAGAAAGATTGCTGCTATTGGG 972
Query 527 GTTAGGATATCTTCTGGAATCACTAGTCATGGTTTGGCCTTAAATATAGATCCTGATATG 586
||| | |||||||||||||||||| |||||||||||||||| || ||| |||||||| ||
Sbjct 973 GTTCGAATATCTTCTGGAATCACTTGTCATGGTTTGGCCTTTAACATATATCCTGATTTG 1032
Query 587 AAGTACTTTGAGCACATTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGA 646
|| ||||||||||||||||| |||| ||||||| |||||||| |||||||||| ||||||
Sbjct 1033 AAATACTTTGAGCACATTGTACCTTATGGGATTCCTGATAAACAAGTTACATCGTTGCGA 1092
Query 647 AGAGAGACGGATA-CTCTGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTG 705
| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1093 AAAGAGACGGATACCT-TGCTTCCTTCAGAAGAAGTGATTCATGAGCAGTTGGTTTCTTG 1151
Query 706 TTTAGCCAAAGCGTTTTCTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTT 765
||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||||||
Sbjct 1152 TTTAGCCAAAGTGTTTTCTTATGATGATATTGTGTGGAAGGAAGATCCTTCAGTCATTTT 1211
Query 766 GGACACCCAAGATAAAGAATAATC-CGGTTTGATCCGGTTTTGA 808
|| ||||| |||||| |||| || |||||||||| ||||||||
Sbjct 1212 GGTCACCCCAGATAACGAATT-TCTCGGTTTGATCAGGTTTTGA 1254
> Ahg353398 jgi|Araly1|353398|fgenesh1_pg.C_scaffold_7000571
Length=1353
Score = 268 bits (145), Expect = 4e-71
Identities = 215/245 (88%), Gaps = 20/245 (8%)
Strand=Plus/Plus
Query 544 AATCACTAGTCATGGTTTGGCCT-TAAATATAGATCCTGATATGAAGTACTTTGAGCACA 602
||| ||||||||||||||||||| | || |||||||||||| |||||| |||||||||||
Sbjct 1128 AATAACTAGTCATGGTTTGGCCTGT-AACATAGATCCTGATTTGAAGTCCTTTGAGCACA 1186
Query 603 TTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTC 662
||||||| |||||||||||||||||||||| | | ||| |||| ||||
Sbjct 1187 TTGTGCCGTGTGGGATTGCTGATAAAGAAG----A-------G-AGACAGAC----ACTC 1230
Query 663 TGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTT 722
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1231 TGCTT-C-TCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTT 1288
Query 723 CTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAG 782
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1289 CTTATGATGATGTTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGATAACG 1348
Query 783 AATAA 787
|||||
Sbjct 1349 AATAA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5