BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04645.1

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470450 jgi|Araly1|470450|fgenesh2_kg.1__404__AT1G04645.1          569    5e-162


> Ahg470450 jgi|Araly1|470450|fgenesh2_kg.1__404__AT1G04645.1
Length=407

 Score =  569 bits (308),  Expect = 5e-162
 Identities = 370/400 (93%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  23   AAATGGAAAAAGTTTCTATTGTTTGCTTCTTCTTCTTTCTTTTATTTGGTTCGGGTT-AT  81
            |||||||||||  || ||| ||||| || |||||||||||||||||||||||  ||| ||
Sbjct  1    AAATGGAAAAAAATTATATAGTTTGTTTGTTCTTCTTTCTTTTATTTGGTTC-AGTTCAT  59

Query  82   GGGGGCCTCCCACCGTTCTGGCGCGCTACGGTTGTCACGATGACAAACTTGATTGGCGGT  141
            |||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  60   GGGGGAGTCCCACCGTTCTGGCGCGATACGGTCGTCACGATGACAAACTTGATTGGCGGT  119

Query  142  CCACCTCTTACCATACATTGCAAATCCAAGCAAGACGATCTAGGAATTCACGTGGTGCCT  201
            ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  120  CCACCTCTTACTATACATTGCAAATCCAAGCAAGACGATCTAGGACCTCACGTGGTGCCT  179

Query  202  TTCAAGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT  261
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTCAGGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT  239

Query  262  TGCAGTTTCCAATGGGACAGTCAATTCAAGTC-GTTTGATATATATGATGCTCAGAGAGA  320
            |||||||| ||||||| || |||||||||| | ||||||||||| |||||||||||||||
Sbjct  240  TGCAGTTTTCAATGGGCCAATCAATTCAAG-CGGTTTGATATATTTGATGCTCAGAGAGA  298

Query  321  TCAAGGTATATGTGATGACTGTCAGTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG  380
            ||||| | |||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct  299  TCAAGATGTATGTGATCAGTGTCACTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG  358

Query  381  TAAAAAGGCGAAATGTTTTCCTTGGAAGTAAGTTTGTACT  420
            ||||||||||||||||||||||||||| ||| ||||||||
Sbjct  359  TAAAAAGGCGAAATGTTTTCCTTGGAATTAATTTTGTACT  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17933126830


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5