BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04645.1 Length=494 Score E Sequences producing significant alignments: (Bits) Value Ahg470450 jgi|Araly1|470450|fgenesh2_kg.1__404__AT1G04645.1 569 5e-162 > Ahg470450 jgi|Araly1|470450|fgenesh2_kg.1__404__AT1G04645.1 Length=407 Score = 569 bits (308), Expect = 5e-162 Identities = 370/400 (93%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 23 AAATGGAAAAAGTTTCTATTGTTTGCTTCTTCTTCTTTCTTTTATTTGGTTCGGGTT-AT 81 ||||||||||| || ||| ||||| || ||||||||||||||||||||||| ||| || Sbjct 1 AAATGGAAAAAAATTATATAGTTTGTTTGTTCTTCTTTCTTTTATTTGGTTC-AGTTCAT 59 Query 82 GGGGGCCTCCCACCGTTCTGGCGCGCTACGGTTGTCACGATGACAAACTTGATTGGCGGT 141 ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 60 GGGGGAGTCCCACCGTTCTGGCGCGATACGGTCGTCACGATGACAAACTTGATTGGCGGT 119 Query 142 CCACCTCTTACCATACATTGCAAATCCAAGCAAGACGATCTAGGAATTCACGTGGTGCCT 201 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 120 CCACCTCTTACTATACATTGCAAATCCAAGCAAGACGATCTAGGACCTCACGTGGTGCCT 179 Query 202 TTCAAGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT 261 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTCAGGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT 239 Query 262 TGCAGTTTCCAATGGGACAGTCAATTCAAGTC-GTTTGATATATATGATGCTCAGAGAGA 320 |||||||| ||||||| || |||||||||| | ||||||||||| ||||||||||||||| Sbjct 240 TGCAGTTTTCAATGGGCCAATCAATTCAAG-CGGTTTGATATATTTGATGCTCAGAGAGA 298 Query 321 TCAAGGTATATGTGATGACTGTCAGTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG 380 ||||| | |||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 299 TCAAGATGTATGTGATCAGTGTCACTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG 358 Query 381 TAAAAAGGCGAAATGTTTTCCTTGGAAGTAAGTTTGTACT 420 ||||||||||||||||||||||||||| ||| |||||||| Sbjct 359 TAAAAAGGCGAAATGTTTTCCTTGGAATTAATTTTGTACT 398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17933126830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5