BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04650.1
Length=3093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910140 jgi|Araly1|910140|Al_scaffold_0001_394 4512 0.0
> Ahg910140 jgi|Araly1|910140|Al_scaffold_0001_394
Length=2898
Score = 4512 bits (2443), Expect = 0.0
Identities = 2722/2857 (95%), Gaps = 17/2857 (1%)
Strand=Plus/Plus
Query 247 TGGGAAGATTTCACATGTCTTGACGTTTCCCTGTGTTTGTTGAACAAGGCGATTCTGCCT 306
|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 49 TGGGAAGACTTCACTTGTCTTGACGTTTCCCAGTGTTTGTTGAACAAGGCAATTCTGCCT 108
Query 307 GTGGCTTCAAAATACCTCGCTTTGGATCGGCCTGATTGCTCACACTACTTTCTTGCTTTT 366
|| |||| |||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 109 GTCACTTCTAAATACCTCGCTTTGGATCGGCCTGATTGCTCCCATTACTTTCTTTCTTTT 168
Query 367 GCTATTAAGGTAAGCCAATGGTGTGCCAAACATTTAAACATGTCTGTTATGTCCATGGAG 426
| ||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 169 GGTATTAAGGTCAGCCAATGGTGTGCTAAACATTTAAACATGTCTGTGATGTCGATGGAG 228
Query 427 GAGTCTCAAGAGGAAGAGCATTCCAACATTTTCTTTCAGCTTCTTTTGGATTATCTTCGT 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 GAGTCTCAAGAGGAAGAGCATTCCAACATTTTCTTTCAGCTTCTTTTGGATTATCTTCAT 288
Query 487 TTTTCTGCCTCAAGCTTTACTGCTATTGGAAAAACTTGTTTCATGACTGATGATGCCTCA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 TTTTCTGCCTCAAGCTTTACTGCTATTGGAAAAACTTGTTTCATGACTGATGAGGCCTCA 348
Query 547 GCTGTTACAGTTCATAAGTTTGTTTCAGAGCAGCTCAATTTGACAAAGGAGTTGATAATG 606
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 349 GCTGTTACAGTTCATAAGTTTGTTTCAGAGCAGCTGAATTTGACAAAGGAGGTGATAATG 408
Query 607 AATTCCAAGAAAGTCGAATCCTTTTCCTCGGAGATTTTTAAGGCTGTGCAAGTGGTAATT 666
||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 409 AATGCCAAGAAAGTTGAATCCTTTTCCTCGGAGATTTTTAAGGCTGCGCAAGTGGTAATT 468
Query 667 GATTCTACTGTTCGTCTGTGCAAAGAATACTCTCAAACAGTGAATCGTGAGGTAAGTGAA 726
|| |||||||||||||||||||||||| |||||| | ||||||||| ||| || ||||
Sbjct 469 GAGTCTACTGTTCGTCTGTGCAAAGAACACTCTCCAGCAGTGAATCATGACGT---TGAA 525
Query 727 ATGAAGACGAGTGGACATGTAGGAAAGGCAAGGATGGAGGAAGGCAACGCTGTGGGTAAT 786
|||||||| | |||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 526 ATGAAGACTAATGGAAATTTAGGAAAGGCAAAGATGGAGGAAGGCAACGCTGTGGGTAAT 585
Query 787 TTGGTGAGCATGATTACGCTGGGAGTTAAATCTCTGAGTGAATTGGGTATGCTTGCTGCA 846
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 TTGGTGAGCATGATAACGCTGGGAGTTAAATCTCTGAGTGATTTGGGTATGCTTGCTGCA 645
Query 847 AGAGATGGTGGAAATCTTGTGGCCATTCTTAATACATCTTGGAAGGGTGTGATTACATTG 906
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGAGATGGTGGCAATCTTGTGGCCATTCTTAATACATCTTGGAAGGGTGTGATTACATTG 705
Query 907 CTTCA-ACTAGACAAGCAGACATTGGTATCTAAGGTAGATGTAGGAGAAATTATCTTAAA 965
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTTCAGA-TAGACAAGCAGACATTGGTATCTAAGGTAGATGTAGGAGAAATTATCTTAAA 764
Query 966 GCTAATATCACTGATCAAGGACTCCCTGAGATTTGCTGCTGAGGCTTGGTCTTGCTCGGT 1025
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 765 GCTAATATCACTGATCAAGAAGTCCCTGAGATTTGCTGCTGAGGCTTGGTCTTGCTCGGT 824
Query 1026 GAAGGAAAACATATCTGCAACGGAAGCCAGAAGGGTCTTTCTTCCTGTGAAATTTTATCT 1085
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 825 GAAGGAAAACATATCTGCAACAGAAGCCCGAAGGGTCTTTCTTCCTGTGAAATTTTATCT 884
Query 1086 TATCAATGCTGTTAAAGTTGTGGCGCTGTTTCCAAGCCAGGCGTCTATGGTGTCCAAGGA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 885 TATCAATGCTGTTAAAGTTGTGGCGCTGTTTCCAAGCCAGGCGTCTATGGTGTTCAAGGA 944
Query 1146 TATAGCACTATGCATCTTGATGATCTCTGCTTTCAAAGTTTCACTGAGCCAACAAACTCA 1205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AATTGCACTATGCATCTTGATGATCTCTGCTTTCAAAGTTTCACTGAGCCAACAAACTCT 1004
Query 1206 TGGAAAATCCGCAAGTGAAGTAATGACTGATCTTCTGGAGAAAACAACTGTAGATCTTCT 1265
||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1005 TGGCAAATCTGCAGGTGAAGTAATGACTGATCTTCTAGAGAAAACAACTGTAGATCTTCT 1064
Query 1266 AGGTGCACTGTTAAATGCAGCTGAACTAACACAGGAATTCAGGCTCACACTTCTTGATTC 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGGTGCACTGTTAAATGCAGCTGAACTAACACAGGAATTCAGGCTCACACTTCTTGATTC 1124
Query 1326 ATTGTTCGTTGATGAA-----TT-CTCAAACCAAATCTGTAAGAAGCAGAGCCATGATTC 1379
|||||||||||||||| || |||||||||||| |||||||| ||||||||||||||
Sbjct 1125 ATTGTTCGTTGATGAACAAGGTTTCTCAAACCAAATTTGTAAGAAACAGAGCCATGATTC 1184
Query 1380 TCACACAAAAACATCATTGGTGGATATCTTGTCTTTATCTGTTGAATCTGCGACAAGTGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCACACAAAAACATCATTGGTGGATATCTTGTCTTTATCTGTTGAATCTGCGACAAGTGC 1244
Query 1440 TAGAGATTTGCTCCTGGCCCGAGTTGTATTGTTCCAGTCTGTCATGAGGTATTCTTTCGA 1499
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 1245 CAGAGATTTGCTCCTGGCCCGAGTTATATTGTTCCAATCTGTCATGAGGTATTCTTCCGA 1304
Query 1500 GCTTGACAAAGATGCAAAGCTTGCAATCACCACAAAGCTGCAATGGCTTCTCGACATATT 1559
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1305 GCTTGACAAAGATGCAAAGCTTGCAATCACCACAAAGCTGCAATGGTTTCTCGACATATT 1364
Query 1560 AGCAGACAAAGAGGTTTACTCTTCAGTTCTTTCCTCTCAGCTACCAATGGCAGATGGTTC 1619
||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1365 AGCGGACAAAGAGATTTATTCTTCAGTCCTTTCCTCTCAGCTACCAATGGCAGATGGTTC 1424
Query 1620 TGGGAAGATAGTAATCTGGGAATCAATGTATTCAGCTCTGCTTCTGTCTCTCAAAACCCT 1679
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1425 TGGGAAGATAATAATCTGGGAATCAATGTATTTAGCTCTGCTTCTGTCTTTCAAAACCCT 1484
Query 1680 TATGATCATACTCTCTTCAACTCCTGCCTGGGAAGAGCTTGAAACATTCCTACTTCAGAA 1739
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1485 TGTGATCATACTCTCTTCAACTCCTGCCTGGGAAGAGCTTGAAACATTCATACTCCAGAA 1544
Query 1740 TCTCTTGCATCCTCACTTCTTGTGTTGGCAGATAGTCATGGAACTCTGGTGCTTCTGGGT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TCTCTTGCATCCTCACTTCTTGTGTTGGCAGATAGTCATGGAACTCTGGTGCTTCTGGGT 1604
Query 1800 TCGTCATGCCACTGACGATTTGGTGGTCGATATGATTAATCAACTTTGTACATTCATTAT 1859
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1605 TCGCCATGCCACTGAGGATTTGGTGGTCGATATGATTAATCAACTTTGTACATTCATGAT 1664
Query 1860 GTCAATGCCATCATCAGAAACACCTCTTTGTCCAGATTCCGTTCTCAGAAGAACTACAAA 1919
|||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||
Sbjct 1665 GTCAATGCCATCATCAGAAACACCGCTTTGCCCAGATTCCATGCTCAGAAGAACTACAAA 1724
Query 1920 GTCCATCTGCTTTCTTCTTACCCATAGCCCCAAATCTTTAACAGTTCAAGTTTACAAACA 1979
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1725 GTCCATCTGCTTTCTTCTTACCCACAGCCCCAAATCTTTAACAGTTCAAGTTTACAAAAA 1784
Query 1980 TATTTCTACTGAGAGCAGATCTGAC-CATGCACCTGATGTATATCTAGCATTGCTGTTAG 2038
|||||| |||||||||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 1785 TATTTCCACTGAGAGCAGATCTGACTC-TGCACCAGGTGTATATCTAGCATTGCTGTTAG 1843
Query 2039 ACGGGTTTCCACTGAATTTTCTTCCAGACAGAATAAAAAACGACGCAAAGAGACAGATAT 2098
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1844 ACGGGTTTCCGCTAAATTTTCTTCCAGACAGAATCAAAAACGACGCAAAGAGACAGATAT 1903
Query 2099 TTGCAGATTTCTTCAACTTCATCGAGAAATTCGAT-GAGAAACCGTCAAATTCCTCCAGA 2157
||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||
Sbjct 1904 TTGCAGATTTCTTCAACTTCATCGAGAAATTT-ATTGAGAAACCATCATATTCCTCCAGA 1962
Query 2158 TACACTCTGCTTGGAGCTCCAGTTTTCACAGTATCTGCTTGCCTTCGGATACTAAAGATG 2217
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 1963 GACACTGTGCTTGGAGCTCCAGTTTTCACACTCTCTGCTTGCCTTCGGATACTAAAGACG 2022
Query 2218 AGCATATCAGAGATTGATGCCAAAACTCTGAACTTTGTCGTCGCTCTCATTCAAAAGTAC 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 AGCATATCAGAGATTGATGCCAAAACTCTGAACTTTGTCGTCGCTCTCATTCAAAAGTAC 2082
Query 2278 AGAAACTCCAAAGATGAAACGACGAAGGAACGTTACAGTGAGATTCTCAGCGAAACATTA 2337
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 2083 AGAAACTCCAAAGATGAAACGACCAAGGATCGTTACAGTGAGATTCTCAGCGAAACACTA 2142
Query 2338 TCTATCATCTCAAGAAGCGAACAGCTATACACTTGCCAAGAGATGGATAATGTCATAACA 2397
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TCAATCATCTCAAGAAGCGATCAGCTATACACTTGCCAAGAGATGGATAATGTCATAACA 2202
Query 2398 GAGCTTCAAAAGCTATTCAATTCAGAAACTAATCATCATCATAATCATCTTCGTAAGTCC 2457
||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct 2203 GAGCTTCAAAAGCTATTCATTTCAGAAACTGATCATCATCATAATCATCTCCGTAAGTCC 2262
Query 2458 AAGCCAAACCTTGCTCTCTTCTTGTCAGGACTCAGCAAATACGAGATGTCTGAAACCAAA 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2263 AAGCCAAACCTTGCTCTCTTCTTGTCAGGACTCAGCAAATACGAGATGTCTGAAACCGAA 2322
Query 2518 AAGTGTCCAAAGAGCATTGCGGTTTGGGAACTCTACCATATGCTTCTCAGGAAACGCCAC 2577
| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2323 ACGTGTCCAAAGAGCCGTGCGGTTTGGGAACTCTACCATTTGCTTCTCAAGAAACGCCAC 2382
Query 2578 TGGGCTTTGGTACACCACGCGGTTACTGCGTTTGGATACTTCTGTGCACGTACAAGCTGT 2637
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2383 TGGGCTTTGGTACACCATGCGGTTACTGCGTTTGGATACTTCTGTGCACGTACAAGCTGT 2442
Query 2638 AATCAGCTATGGAGATTCGTACCTGAAGACGCGGCTCTAGCCTTCGATATAGCTTCTGGA 2697
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2443 AATCAGCTATGGAGATTCGTACCTGAAGACGCAGCTCTAGCCTTCGATATACCTTCTGGA 2502
Query 2698 AAAGAAGCGAAAACAGAGCGGTTCATGTCGGAATTAAAGATGTTTTTGGAGAAAGAACAA 2757
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2503 AAAGAAGCTAAAACAGAGCGGTTCATGTCGGAACTAAAGATGTTTTTGGAGAAAGAACAA 2562
Query 2758 GCGCTTCTTTCAATCACACCTTCAGAAGAAGAACTGGAGTTACTTTCGAAAGAAGGCACC 2817
|||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 2563 GCGCTTCTCTCAATCACACCTTCAGAAGAGGAACTCAAGTTACTTGCGAAAGAAGGCACC 2622
Query 2818 GAGGTTAAGGCAACAGTGCAGAAGCTTCTAGAAGGAAGAAGCCAGAGGTCAATGGAAGTA 2877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 AAGGTTAAGGCAACAGTGCAGAAGCTTCTAGAAGGAAGAAGCCAGAGGTCAATGGAAGTA 2682
Query 2878 GAGAAACGACCGAACAAGAAAAGGAAACTTCCAGAAGGAATTTGCAGAGGAATGGAGTTA 2937
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 GAGAAACGACCAAACAAGAAAAGGAAACTTCCAGAAGGAATTTGCAGAGGAATGGAGTTA 2742
Query 2938 TTGCAGAATGGAGTGAAGAGGATTAACGAGGGTTTAAACGAATTGAGGTCAGATGAAAAT 2997
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 2743 TTGCAGAATGGAGTGAAGAGGATTAAGGAAGGTTTAAGCGAATTGAGGTCAGATGAAAAT 2802
Query 2998 GAGAGTGAAGAGTTTCAAAAGAGTTTA-TCGAATCAGTTTTCGTGTCTTGAAGATTTGGT 3056
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 2803 GAGAGTGAAGAGTTTCAAAAGAGTTTACT-GAATCAGTTTTCGTGTCTTGAAGATTTAGT 2861
Query 3057 CTCTCATTTGTTAAGCCTCACCGCAGCTTCGGACTAA 3093
|||||||||||||||||||||||||||||||||||||
Sbjct 2862 CTCTCATTTGTTAAGCCTCACCGCAGCTTCGGACTAA 2898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116822781415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5