BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04660.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470452 jgi|Araly1|470452|fgenesh2_kg.1__406__AT1G04660.1 1567 0.0
> Ahg470452 jgi|Araly1|470452|fgenesh2_kg.1__406__AT1G04660.1
Length=1187
Score = 1567 bits (848), Expect = 0.0
Identities = 1056/1147 (92%), Gaps = 51/1147 (4%)
Strand=Plus/Plus
Query 155 AATAATAGAATTCAAATGC--TCGCTCGCTGACTGTAGTACCCTGATATCACTAGCCAA- 211
||||||||||||||||||| ||||| ||||||||||| | |||||| |||||||||||
Sbjct 78 AATAATAGAATTCAAATGCTTTCGCTTGCTGACTGTAG-AGCCTGATGTCACTAGCCAAT 136
Query 212 TACAACTTACGaaaaaatgaaaaatgaaaaaaaTTTTAAACTCGACCAATCAATCGTCCA 271
| ||| ||||| || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 137 TCCAATTTACG----AA--AAAAA-GAAAAAAA---AAAACTCGACCAATCAATTGTCCA 186
Query 272 TGGTATAGTTGTATCATCAGACAGCC--T--TTACTAAG-GAAAAATGTTATAAATTGGG 326
|||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 187 TGGTATAGTTGTATCATCAGACAGCCTTTAATTACCAAGTAAAAAATGTTATAAATTGGG 246
Query 327 TTCGTGGCCAAATTTATGACTTTCAACTGTCACCAACCTTACATTTTGCTATATAAACCC 386
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 247 TTCACAGCCAAATTTATGACTTTCAACTGTCACCAACCTTACATTTTGCTATAAAAACCC 306
Query 387 TAAGAAAC---TCATTATAAACTTCAACAACATAAAAGACGATCAATATAATCTAGaaaa 443
||||||| |||||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 307 CAAGAAACTGATCATTACAAA---CATCAACATAAAAGACGATCAATATAATCTAG--AA 361
Query 444 aaaaaaagaagagagaagagagaAATGTCGAGAGCTTTGTCAGTCGTTTGTGTCTTGCTC 503
||||| || ||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 AAAAAGAG-AGA-AG-AGAGAGAGATGTCGAGAGCTTTGTCAGTCGTTTGTGTCTTGCTC 418
Query 504 GCCATATCCTTCGTCTGTGCACGTGCTCGTCAGGTGCCGGGAGAGTCTGATGAGGGAAAG 563
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTATATCCTTCGTCTACGCACGTGCTCGTCAGGTGCCGGGAGAGTCTGATGAGGGAAAG 478
Query 564 ACGACGGGACATGACGATACAACAACAATGCCCATGCATGCAAAAGCAGCTGATCAGTTA 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACGACGGGACATGACGATACAACAACAATGCCCATGCATGCAAAAGCAGCTGATCAGTTA 538
Query 624 CCACCAAAGAGCGTCGGCGACAAAAAATGCATCGGAGGAGTTGCTGGAGTCGGTGGATTC 683
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 CCACCAAAGAGCGTCGGCGACAAAAAATGCATCGGAGGAGTTGCTGGAGTAGGTGGATTC 598
Query 684 GCCGGAGTTGGTGGTGTTGCCGGCGTGGGAGGTCTAGGGATGCCACTCATCGGTGGTCTT 743
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 GCCGGAGTTGGTGGTGTTGCCGGCGTGGGAGGTCTAGGCATGCCACTCATCGGTGGTCTT 658
Query 744 GGCGGGATCGGTAAGTATGGTGGCATAGGCGGTGCAGCTGGAATCGGTGGATTTCATAGT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGCGGGATCGGTAAGTATGGTGGCATAGGCGGTGCAGCTGGAATCGGTGGATTTCATAGT 718
Query 804 ATAGGCGGTGTTGGCGGTCTAGGCGGTGTCGGAGGAGGTGTTGGCGGTCTAGGCGGTGTT 863
|||||||||||||||||| |||| || | || |||||| ||||||||||||||
Sbjct 719 ATAGGCGGTGTTGGCGGTGTAGGAGG-G--GG------TGTTGGAGGTCTAGGCGGTGTA 769
Query 864 GGAGGGGGTGTTGGTGGTCTAGGTGGCGTTGGCGGTCTAGGTGGAGCTGGTTTAGGCGGT 923
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 770 GGAGGGGGTGTTGGCGGTCTAGGCGGTGTTGGCGGTCTAGGTGGAGCTGGTTTAGGCGGT 829
Query 924 GTAGGTGGTGTTGGCGGTGGTATTGGTAAAGCCGGTGGTATTGGCGGTTTAGGTGGTCTA 983
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 830 GTAGGTGGTGTTGGCGGTGGTATTGGTAAAGCTGGTGGTATTGGCGGTTTAGG----C-- 883
Query 984 GGCGGAGCCGGAggtggtttaggtgg---agttggtggtctcggtaaggctggtggtatt 1040
|| ||||||||||||||| ||||| || ||| ||||||||||||||||||||||||
Sbjct 884 GG---AGCCGGAGGTGGTTTGGGTGGTCTAGGTGGAGGTCTCGGTAAGGCTGGTGGTATT 940
Query 1041 ggtgttggtggtggtatcggtggtggacacggcgtggtcggtggtgtgATCGATCCACAT 1100
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 941 GGTGTTGGTGGTGGTATCGGCGGTGGACACGGCGTGGTCGGTGGTGTGATCGATCCACAT 1000
Query 1101 CCTTAATAGAGAGTATTTGTTGGTTAGGGTTTTAATTAAGGAATAATTAATTAGTTTCGA 1160
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1001 CCTTAATAGAGAGTATTTGTTGGTTAGGGTTTTCATTAAGAAATAATTAATTAGTTTCGA 1060
Query 1161 TGTTATTGTTGGTCTTTTAATTCTGTGATCATTAGGGTGACTTTTGATCTATTTTCTAGT 1220
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGTTATTGTTGGTCTTTTAATTCGGTGATCATTAGGGTGACTTTTGATCTATTTTCTAGT 1120
Query 1221 TTGGGCTTTTGTAACGTTTGCTTTGATTTCGGCCGTGGTGTTATGAAATGTGCGACTCTC 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1121 TTGGGCTTTTGTAACGTTTGCTTTGATTTCGGCCGTGGTGTTATGAAATGTGTGACCCTC 1180
Query 1281 TATGTTT 1287
|||||||
Sbjct 1181 TATGTTT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5