BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04670.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470453 jgi|Araly1|470453|fgenesh2_kg.1__407__AT1G04670.1 804 0.0
> Ahg470453 jgi|Araly1|470453|fgenesh2_kg.1__407__AT1G04670.1
Length=595
Score = 804 bits (435), Expect = 0.0
Identities = 523/562 (93%), Gaps = 19/562 (3%)
Strand=Plus/Plus
Query 91 TTGTCTTCAACACTTTGATTCT---ATAG--AAGTTAAGATGTATGCATCAAAACTGGGT 145
|||||||| || |||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 1 TTGTCTTCTACGCTTTGATTCTACAATAGTTAA-TTAAGATGCATGCATCAAAACTGGGT 59
Query 146 AAAGTTCTGATCTCTAATGGTAAAACGGCAAGGAGTGTTCCACTATATAGGACATTCGTT 205
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 AAAGTTCTGATTTCTAATGGTAAAACGGCAAGGAGTGTTCCACTATGTAGGACATTCGTT 119
Query 206 TCAGCGTCACCGAGGCCCTTACAGGGAAAAGAAGAGGCAGAGCAATGCCAAAAGGTGAAA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAGCGTCACCGAGGCCCTTACAGGGAAAAGAAGAGGCAGAGCAATGCCAAAAGGTGAAA 179
Query 266 GAAGCAGCAGAGGCAGTGAAAGAAGGAGCGAAGCAAGTGAAGGAAACTACTGAGTACATC 325
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 180 GAAGCAGCAGAGGCAGTGAAAGAAGGAGCCAAGCAAGTGAAGGAAACCACTGAGTACATC 239
Query 326 CAAGATGTCGCTTCCACTACTGCTGGCCGAGTGACTAAGATGACAAAAGATGTAACGGAG 385
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 240 CAAGATGTCGCTTCCACTACTGCTGGCCGTGTGACTAAGATGACAAAAGATGTAACTGAA 299
Query 386 AAAGTCACTGAGACAACGGATACCATCACTGAAAAAGCTAAAGGTTCTGTCTCTGGTGTT 445
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGTCACTGAGACAACGGATTCCATCACTGAAAAAGCTAAAGGTTCTGTCTCTGGTGTT 359
Query 446 TTAGGCACCGCTAAAAACGCTACCGATATCATCAAGAACAAGATCCTTGGTGGTGATTAG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTAGGCACCGCTAAAAACGCTACCGATATCATCAAGAACAAGATCCTTGGTGGTGATTAG 419
Query 506 TTAAAATCTACCCATT-TATATATCATATTATTTATGTATGTCTCAATAAAGTAATATAT 564
||| ||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 420 TTACAATCTACCC-TTATATATTTGATATTATTTATGTACGTCTCAATAAAGTAATATAT 478
Query 565 T--GAAAATTTAAAGTTTTGATTTGGTAATTAT-T-A-T----GATATATCTGATTACGT 615
| |||||||| ||||||||||||||||||||| | | | |||||||| ||||| |
Sbjct 479 TCAGAAAATTTTAAGTTTTGATTTGGTAATTATATGAATTCATGATATATCAGATTAAAT 538
Query 616 TATAAATCTA-AGTGAAGATTG 636
|||||||||| | |||| ||||
Sbjct 539 TATAAATCTACA-TGAAAATTG 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5