BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04680.1
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919156 jgi|Araly1|919156|scaffold_100437.1 2111 0.0
Ahg355442 jgi|Araly1|355442|fgenesh1_pg.C_scaffold_7002615 641 0.0
> Ahg919156 jgi|Araly1|919156|scaffold_100437.1
Length=1340
Score = 2111 bits (1143), Expect = 0.0
Identities = 1275/1340 (95%), Gaps = 3/1340 (0%)
Strand=Plus/Plus
Query 85 GCTCAGCTTCTGCCTCTCCAATGGCGGTTCTTCCGACATGGCTTTTAGCAATGATGTGTT 144
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCAGCTTCTGCTTCTCCAATGGCGGTTCTTCCGACATGGCTTTTAGCAATGATGTGTC 60
Query 145 TACTCTTCTTCGTCGGAGCTAT-G-G-AGAACACTACACACGACAACATCTCTTCTCTCC 201
|||||||||||| |||||| || | | ||||||||||||||||||| ||||| ||| |||
Sbjct 61 TACTCTTCTTCGCCGGAGCAATGGAGAAGAACACTACACACGACAAAATCTCATCTATCC 120
Query 202 CTAGATCCGACGAAACCGAATGGAACCAACACGCAGTGACGAATCCAGATGAAGTAGCGG 261
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTAGATCCGACGAAAACGAATGGAACCAACACGCAGTGACGAATCCAGATGAAGTAGCGG 180
Query 262 ACGAAGTTCTCGCCTTGACAGAAATGAGTGTGAGAAACCATACCGAGAGGAGGAAACTAG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGAAGTTCTCGCCTTGACAGAAATGAGTGTGAGAAACCATACCGAGAGGAGGAAACTAG 240
Query 322 GTTACTTTACTTGCGGAACAGGAAACCCTATCGACGATTGTTGGCGATGTGACCCCAATT 381
|||||||||||||||||||||| |||||||||||||||||||||||||| || | |||||
Sbjct 241 GTTACTTTACTTGCGGAACAGGCAACCCTATCGACGATTGTTGGCGATGCGATCGCAATT 300
Query 382 GGCACAAGAACCGTAAACGCCTAGCGGATTGCGGTATCGGATTTGGAAGAAACGCGATCG 441
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGCACAAGAACCGCAAACGCCTAGCGGATTGCGGTATCGGATTTGGAAGAAACGCTATCG 360
Query 442 GTGGTCGTGATGGACGATTCTACGTAGTCACTGACCCAAGAGACGACAATCCGGTTAACC 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGTCGTGATGGACGTTTCTACGTAGTCACTGACCCAAGAGACGACAATCCGGTTAACC 420
Query 502 CTAGACCGGGGACTTTACGTCACGCCGTGATCCAAGACCGACCACTATGGATCGTTTTCA 561
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGACCTGGGACATTACGTCACGCCGTGATCCAAGACCGACCACTATGGATCGTTTTCA 480
Query 562 AACGTGACATGGTGATTCAGCTAAAACAAGAGCTTATCGTTAACAGTTTCAAAACGATCG 621
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 481 AACGTGATATGGTGATTCAGTTAAAACAAGAGCTTATCGTTAACAGCTTCAAAACGATCG 540
Query 622 ATGGACGTGGCGCAAACGTTCACATTGCTAACGGTGGTTGCATCACGATTCAGTTTGTGA 681
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 541 ATGGACGTGGCGCAAACGTTCACATCGCTAATGGCGGTTGCATCACGATTCAGTTTGTGA 600
Query 682 CGAATGTGATCGTTCACGGATTGCATATTCATGACTGTAAACCAACTGGTAACGCTATGG 741
||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 601 CGAATGTGATCGTTCACGGATTGCATATTCATGACTGTAGACCGACCGGTAACGCTATGG 660
Query 742 TGAGAAGCTCAGAGACGCATTTTGGGTGGAGGACAATGGCAGATGGTGACGCGATTTCGA 801
||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 661 TGAGAAGCTCAGAGACGCACTTTGGATGGAGGACGATGGCCGATGGTGACGCGATTTCTA 720
Query 802 TCTTTGGATCGAGTCATGTATGGATTGATCATAACTCGTTGTCCCATTGCGCTGATGGGC 861
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 TCTTTGGATCGAGTCATGTATGGATTGATCATAACTCGTTGTCTCATTGCGCTGATGGGC 780
Query 862 TTGTGGACGCAGTCATGGGCTCAACCGCGATTACCATCTCTAACAACCACTTAACTCACC 921
| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 781 TCGTGGACGCAATCATGGGCTCTACCGCGATTACCATCTCGAACAACCACTTAACTCACC 840
Query 922 ATAACGAGGTTATGTTGCTAGGACATAGTGACTCGTACATGAGGGACAAAGCTATGCAAG 981
| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 841 ACAACGAGGTTATGTTGCTCGGACATAGTGATTCGTACATCAGGGACAAAGCTATGCAAG 900
Query 982 TGACCATTGCTTACAATCATTTTGGAGTCGGACTTATTCAAAGAATGCCGAGGTGTCGAC 1041
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 901 TTACCATTGCTTATAATCATTTTGGAGTGGGACTTATTCAAAGAATGCCTAGGTGTCGAC 960
Query 1042 ACGGGTACTTCCATGTTGTTAACAACGACTACACTCACTGGGAAATGTACGCAATAGGTG 1101
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 961 ACGGGTACTTCCATGTCGTGAACAACGACTACACTCACTGGGAAATGTACGCGATAGGTG 1020
Query 1102 GTAGCGCAAACCCGACAATCAACAGTCAAGGAAACCGCTATGCCGCCCCAAAAAACCCCT 1161
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1021 GTAGCGCAAACCCGACAATCAACAGTCAAGGAAACCGTTACGCCGCCCCGAAAAACCCCT 1080
Query 1162 TTGCTAAAGAGGTGACGAAGAGAGTGGACACACCGGCTAGTCATTGGAAAGGATGGAATT 1221
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1081 TTGCTAAAGAGGTGACGAAGAGAGTAGACACACCGGCAAGTCACTGGAAAGGATGGAATT 1140
Query 1222 GGAGATCGGAAGGAGATTTGCTTCAGAACGGTGCTTACTTCACTTCTTCAGGAGCCGCCG 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 GGAGATCGGAAGGAGATTTGCTTCAGAACGGTGCTTACTTCACTTCTTCAGGAGCCGCTG 1200
Query 1282 CGTCTGGCAGCTACGCACGTGCCTCCAGCCTTTCCGCGAAATCTTCGTCATTGGTCGGAC 1341
|||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1201 CGTCCGGTAGCTACGCACGTGCCTCCAGCCTCTCCGCGAAATCTTCTTCATTGGTCGGAC 1260
Query 1342 ACATTACTTCCGACGCTGGAGCTCTACCTTGTCGCAGAGGACGTCAATGTTCCTCATAGT 1401
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1261 ACATTACTTCTGACGCCGGAGCTCTACCTTGTCGCAGAGGACGGCAATGTTCCTCATAGT 1320
Query 1402 TACTACCCCACCACCAAAAT 1421
||| ||||||||||||||||
Sbjct 1321 TACCACCCCACCACCAAAAT 1340
> Ahg355442 jgi|Araly1|355442|fgenesh1_pg.C_scaffold_7002615
Length=1455
Score = 641 bits (347), Expect = 0.0
Identities = 748/941 (79%), Gaps = 30/941 (3%)
Strand=Plus/Plus
Query 312 AGGAAACTAGG-TTACTT-TACTTGCGGAACAGGAAACCCTATCGACGATTGTTGGCGAT 369
||||| ||||| || ||| | | || ||||| || || || || || || |||||||| |
Sbjct 373 AGGAAGCTAGGATT-CTTCT-CATGTGGAACTGGTAATCCAATTGATGACTGTTGGCGTT 430
Query 370 GTGACCCCAATTGGCACAAGAACCGTAAACGCCTAGCGGATTGCGGTATCGGATTTGGAA 429
|||||| || ||||||||||||||||||||||| |||||||| || || || |||||||
Sbjct 431 GTGACCGTAACTGGCACAAGAACCGTAAACGCCTTGCGGATTGTGGGATTGGTTTTGGAA 490
Query 430 GAAACGCGATCGGTGGTCGTGATGGACGATTCTACGTAGTCACTGACCCAAGAGACGACA 489
| ||||| || ||||||||||||||||| |||||||| || |||||||| | || || |
Sbjct 491 GGAACGCAATTGGTGGTCGTGATGGACGCTTCTACGTTGTTACTGACCCTACTGATGA-A 549
Query 490 -ATCCGGTTAA-CCCTAGACCGGGGACTTTACGTCACGCCGTGATCCAAGACCGA-CCAC 546
|| ||||| ||| | ||| || ||| |||| || || || ||||| || || || |
Sbjct 550 GATGTTGTTAATCCC-AAACCTGGAACTCTACGCCATGCTGTCATCCAGGA-GGAGCCTC 607
Query 547 TATGGATCGTTTTCAA-ACGTGACATGGTGATTCAGCTAAAACAAGAGCTTATCGTTAAC 605
| ||||| || ||||| | | || ||||| || |||| ||||| ||||| ||| | |||
Sbjct 608 TGTGGATTGTGTTCAAGA-GGGATATGGTTATAGAGCTGAAACAGGAGCTGATCATGAAC 666
Query 606 AGTTTCAAAACGATCGATGGACGTGGCGCAAACGTTCACATTGCTAACGGTGGTTGCATC 665
|||||||| || || ||||| |||||| | || || || || || || |||| |||||||
Sbjct 667 AGTTTCAAGACCATTGATGGCCGTGGCTCCAATGTCCATATAGCCAATGGTGCTTGCATC 726
Query 666 ACGATTCAGTTTGTGACGAATGTGATCGTTCACGGA-TTGCATATTCATGACTGTAAACC 724
|| ||||||||| | || ||||| ||| |||| ||| || ||||||||||| || || ||
Sbjct 727 ACCATTCAGTTTATAACCAATGTCATCATTCATGGACTT-CATATTCATGATTGCAAGCC 785
Query 725 AACTGGTAACGCTATGGTGAGAAGCTCAGAGA-CGCATTTTGGGTGGAGGACAATGGCAG 783
||||| || || ||||| |||||||| | | | || ||||| |||||||||||||| |
Sbjct 786 TACTGGAAATGCAATGGTTAGAAGCTC-GCCATCTCACTTTGGTTGGAGGACAATGGCTG 844
Query 784 ATGGTGACGCGA-TTTCGATCTTTGGATCGA-GTCATGTATGGATTGATCATAACTCGT- 840
||||||| || | | || || |||||||| | |||| | ||||||||||||||||| |
Sbjct 845 ATGGTGATGC-AGTCTCCATTTTTGGATC-ATCTCATATCTGGATTGATCATAACTC-TC 901
Query 841 TGTCCCATTGCGCTGATGGGCTTGTGGACGCAGTCATGGGCTCAACCGCGATTACCATCT 900
| ||||| || |||||||| ||||| || || |||||||| || || || ||||| | |
Sbjct 902 TCTCCCACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGTTCTACTGCTATTACTGTTT 961
Query 901 CTAACAACCACTTAACTCACCATAACGAGGTTATGTTGCTAGGACATAGTGACTCGTACA 960
| || |||||||| || ||||| || ||||| |||||||| || || |||||||||||||
Sbjct 962 CCAATAACCACTTTACCCACCACAATGAGGTGATGTTGCTTGGGCACAGTGACTCGTACA 1021
Query 961 TGAGGGACAAAGCT-ATGCAAGTGACCATTGCTTACAATCATTTTGGAGTCGGACTTA-T 1018
| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1022 CAAAAGA-TAAGCTAATGCAAGTGACCATTGCTTACAATCATTTTGGAGTCGGACT-AGT 1079
Query 1019 TCAAAGAATGCCGAGGTGTC-GACACGGGTACTTCCATGTTGTTAACAACGACTACACTC 1077
||| |||||||| ||||| | |||| ||||| |||||||| |||||||| |||||||| |
Sbjct 1080 TCAGAGAATGCCAAGGTG-CAGACATGGGTATTTCCATGTGGTTAACAATGACTACACAC 1138
Query 1078 ACTGGGAAATGTACGCAATAGGTGGTAGCGCAAACCCGACAATCAACAGTCAAGGAAACC 1137
||||||| |||||||| || ||||| || ||| | || || ||||||||||||||||||
Sbjct 1139 ACTGGGAGATGTACGCCATTGGTGGGAGTGCAGAGCCAACCATCAACAGTCAAGGAAACA 1198
Query 1138 GCTATGCCGCCCCAAAAAACCCCTTTGCTAAAGAGGTGACGAAGAGAGTGGACACACCGG 1197
| ||||| || |||| ||| ||| || |||||||||||||| |||||||| ||| |
Sbjct 1199 GATATGCTGCTCCAATGGACCGCTTCGCCAAAGAGGTGACGAAAAGAGTGGAGACAGATG 1258
Query 1198 CTAGTCATTGGAA-AGGATGGAATTGGAGATCGGAAGGAGA 1237
| ||| | ||||| | | ||||||||||| || ||||||||
Sbjct 1259 CAAGTGAGTGGAAGAAG-TGGAATTGGAGGTCAGAAGGAGA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72257194765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5