BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04690.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470455 jgi|Araly1|470455|fgenesh2_kg.1__409__AT1G04690.1 2194 0.0
> Ahg470455 jgi|Araly1|470455|fgenesh2_kg.1__409__AT1G04690.1
Length=1411
Score = 2194 bits (1188), Expect = 0.0
Identities = 1346/1418 (95%), Gaps = 27/1418 (2%)
Strand=Plus/Plus
Query 5 TTCTTCATTCATTACAACAAACT-CT-TTGAGACCTAAagagagagagagCGATAGT--G 60
||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |
Sbjct 2 TTCTTCATTCATTACAACAAACTCCTCTTGAGACCTAGAGAGAGAGAGAGAGATAGTGAG 61
Query 61 AGATTTAGATCAACAGATTTGAATCGATTTCTG-AAAACATGCAGTACAAGAATCTGGGG 119
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 62 AGATTTAGATCAACAGATTTGAATCGATTTCTGCAAAA-ATGCAGTACAAGAATCTGGGG 120
Query 120 AAATCGGGTTTAAAAGTGAGCACGCTCTCGTTCGGAGCGTGGGTTACGTTCGGGAACCAG 179
||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 121 AAATCGGGTTTGAAGGTGAGCACGCTCTCATTCGGAGCATGGGTTACGTTTGGGAACCAG 180
Query 180 CTCGATGTGAAAGAAGCGAAATCGATTCTTCAGTGTTGTCGTGATCATGGAGTCAATTTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGATGTGAAAGAAGCGAAATCGATTCTTCAGTGTTGTCGTGATCATGGAGTCAATTTC 240
Query 240 TTCGATAACGCTGAGGTTTACGCTAATGGTCGCGCTGAGGAGATTATGGGTCAAGCGATT 299
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCGACAACGCGGAGGTTTACGCTAATGGTCGCGCTGAGGAGATTATGGGTCAAGCGATT 300
Query 300 CGTGAACTGGGTTGGCGTCGATCCGATATCGTCATCTCTACCAAGATCTTCTGGGGTGGT 359
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGAGCTGGGTTGGCGTCGATCTGATATCGTCATCTCTACCAAGATCTTCTGGGGTGGT 360
Query 360 CCTGGTCCTAACGATAAGGGTTTATCTAGGAAACATATCGTTGAAGGCACTAAAGCTTCT 419
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 CCTGGTCCTAACGATAAGGGTTTATCGAGGAAACATATCGTCGAAGGCACTAAAGCTTCT 420
Query 420 CTCAAACGACTTGATATGGATTACGTTGATGTGCTCTATTGCCACAGGCCGGATGCTTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCAAACGACTTGATATGGATTACGTTGATGTGCTCTATTGCCACAGGCCGGATGCTTCA 480
Query 480 ACTCCTATCGAAGAGACTGTGAGGGCGATGAACTACGTGATTGATAAGGGTTGGGCCTTC 539
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 481 ACTCCTATTGAAGAGACGGTTAGGGCGATGAACTACGTGATTGATAAGGGTTGGGCATTT 540
Query 540 TATTGGGGAACCAGTGAATGGTCAGCTCAACAAATTACGGAGGCATGGGGAGCTGCTGAC 599
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TATTGGGGTACCAGTGAATGGTCAGCTCAACAAATTACCGAGGCATGGGGAGCTGCTGAC 600
Query 600 CGGTTGGATTTGGTTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCAC 659
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 601 CGGTTGGATTTGGTTGGTCCAATCGTCGAACAGCCAGAATACAACATGTTTGCTAGGCAC 660
Query 660 AAAGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACTACCTGG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AAAGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACTACTTGG 720
Query 720 AGCCCACTTGCATCTGGTGTGCTCACTGGTAAATACAACAAGGGAGCTATTCCCTCAGAC 779
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCCCACTTGCATCGGGTGTGCTCACTGGTAAATACAACAAGGGAGCTATTCCCTCAGAC 780
Query 780 AGCCGATTTGCATTGGAGAACTACAAAAACCTTGCCAATAGATCACTTGTGGATGACGTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGCCGATTTGCATTGGAGAACTACAAAAACCTTGCCAATAGATCACTTGTGGATGACGTG 840
Query 840 CTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAG 900
Query 900 CTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACA 959
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 CTTGCCATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCCGTTATCACTGGTGCCACA 960
Query 960 AGGGAGTCACAGATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 AGGGAGTCACAGATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACACCT 1020
Query 1020 ATTGTTCTGGACAAGATTGAGCAAGTGATACAGAGCAAACCAAAACGTCCTGAATCATAT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 ATTGTTCTGGACAAGATTGAGCAAGTGATACAGAGCAAACCAAAACGTCCTGAATCGTAT 1080
Query 1080 AGGTAAAACCAACATCCAAGATCTCTCTTCCCTATTCAATCG-TTTACAAAAGAGTGTTG 1138
||||||||||| || |||||||| |||| |||||||||||| ||| |||||||||||||
Sbjct 1081 CGGTAAAACCAAAATTCAAGATCTTTCTTTCCTATTCAATCGCTTT-CAAAAGAGTGTTG 1139
Query 1139 CAGGAAAAAGA-AAA-----CATTAGAAGAAGCTCTGTGATGTATGTTGTTGGATGTT-- 1190
||||||||||| ||| |||||||||||| | |||||||| ||||||||||||||
Sbjct 1140 CAGGAAAAAGATAAAGAAAACATTAGAAGAAGATGTGTGATGTTTGTTGTTGGATGTTTT 1199
Query 1191 GTCTCGTTTTCGCTTTGTTTGTTCTCTTTAGCAGCTTATGCATTTTTAAGACTCAGACAG 1250
||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 GTCTCGTGTTGGCTTTGTTTGTTCTCTTTGGCAGCTTATGCATTTTTAAGACTCAGACAG 1259
Query 1251 AGAGAA-AGAGAGACTAATGtttttttttagtttttCTTGTTTCATCATTTAAAAAACGG 1309
||| || ||||||| |||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 1260 AGA-AAGAGAGAGAGTAATGTGTTTTTTTAGTTGTT---GTTTCATCATTTAAAAA-CGG 1314
Query 1310 TCTTATTTGTTACTTGTTAGT-GC-AA-CTTAAAGTTTGGTTCTTGTAGTTTGCCATGTC 1366
||||||| ||||||||||||| | || ||||||||||||||||||||||| || || ||
Sbjct 1315 TCTTATT-GTTACTTGTTAGTAGTGAAACTTAAAGTTTGGTTCTTGTAGTT-GCGATATC 1372
Query 1367 ATGACGTCAATATATTGAATAGCTCATCAAACAATTCT 1404
||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATGACGTCAATATATTGAATAGCTCATCAAACAATTCT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5