BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04710.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 2056 0.0
Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 1269 0.0
> Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1
Length=1394
Score = 2056 bits (1113), Expect = 0.0
Identities = 1283/1364 (94%), Gaps = 15/1364 (1%)
Strand=Plus/Plus
Query 116 GCCTCAGCTTGCTTGTCCAAAGACAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 175
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTCACCTTGCTTGGCCAAAGAAAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 60
Query 176 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATACATT- 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATAC-TTA 119
Query 235 TCCAGACGAGTTGCTTGCCTCTGTATTGAGAGCATTGATAGAGAAAACTAATGTAAACCC 294
||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 120 CCCAGATGAGTTGCTTGCATCTGTATTGAGAGGATTGATAGAGAAAACAAATGTTAACCC 179
Query 295 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAG 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAC 239
Query 355 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCGAAACTGTTCCCATCAGAACCGT 414
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 240 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGAAACTGTTCCAATCAGAATCGT 299
Query 415 GAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGC 474
||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||
Sbjct 300 GAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCTGACGTCGCCGCTGCCATAAGAGC 359
Query 475 TGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 419
Query 535 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCTCACAATTGCCTTCT 594
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 420 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCACATAGTTGCCTTCT 479
Query 595 TCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 654
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCAATGGGTATTACTTCAGAGAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 539
Query 655 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGG-AAAGT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 540 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGGTAAA-T 598
Query 714 TTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGTTGACCCAAAGACAGGTGATGAGA 773
|||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGTTGACCCAAAAACAGGTGATGAGA 658
Query 774 AACCCATAACAGTTTCTGTGGATGATGGGATTCGACCTAACACAACCCTTTCCGGACTTG 833
|| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 AATCCATAACCGTTTCTGTGGATGATGGGATACGACCTAACACAACCCTTTCCGGACTTG 718
Query 834 CAAAGCTGAAG-CCAGTGTTTAAGGAAGACGGAACCACAACTGCTGGGAATTCTAGCCAA 892
||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 719 CAAAGCT-AAGACCAGTGTTTAAGGAAGACGGTACCACAACTGCTGGAAATTCTAGCCAA 777
Query 893 TTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGC 952
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAGGAGAAATGTCGCAATGCAGAAAGGC 837
Query 953 CTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCAGTTGGTGTGGACCCAGCCATCATG 1012
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 CTTCCCATTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTGGACCCAGCCATCATG 897
Query 1013 GGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTCAAGGCAGCTGGTTTAGAACTCAAT 1072
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 GGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGTCAAGGCGGCTGGTTTAGAACTCAAT 957
Query 1073 GACGTCGACTTGTTTGAGATTAACGAGGCATTTGCATCTCAGTTTGTTTATTGTCGGAAC 1132
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 958 GACATCGACTTGTTTGAGATCAACGAGGCGTTTGCATCTCAGTTTGTTTATTGTCGGAAC 1017
Query 1133 AAGCTCGGGCTAGACGCGGAAAAGATCAATGTCAATGGAGGAGCCATAGCCATTGGACAT 1192
||| | ||| | ||| |||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 1018 AAGTTGGGGATTGACCCGGAAAAGGTCAATGTCAATGGAGGGGCCATAGCCATCGGACAT 1077
Query 1193 CCCTTGGGCGCTACAGGAGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGACGT 1252
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 1078 CCCTTGGGTGCTACAGGCGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGCCTT 1137
Query 1253 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGTATAGGTTCGGGAATGGGAGCAGCC 1312
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGCATAGGTTCGGGAATGGGAGCAGCC 1197
Query 1313 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGTGATGTCCGGAAAGTCTAATGA 1372
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1198 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGCGATGTCCGGAAAGT--AG-GA 1254
Query 1373 CAATAAGGCCTTTTGACCAAGGACCCTAGCTAAGGA-C-----CAAATTAGAACACAGTA 1426
| ||||||||||||||||||||| ||||||| ||| | |||||||||||||| ||
Sbjct 1255 CTATAAGGCCTTTTGACCAAGGAACCTAGCTTAGGGGCTTTTACAAATTAGAACACACTA 1314
Query 1427 CTACAAATAAACATTATCACAAATAAATGCGTTCTAGATGAATA 1470
|||||||||||||| || |||||||| ||| || ||||||||||
Sbjct 1315 CTACAAATAAACATCATTACAAATAAGTGCTTTATAGATGAATA 1358
> Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1
Length=1769
Score = 1269 bits (687), Expect = 0.0
Identities = 1033/1202 (86%), Gaps = 16/1202 (1%)
Strand=Plus/Plus
Query 154 ATATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACG 213
|||||||||||||||||| |||||||||||||| |||||| |||| |||||| | |||||
Sbjct 292 ATATGGAGATGATGTTGTGATTGTCGCGGCACATAGGACTCCACTATGCAAGTCTAAACG 351
Query 214 TGGCAGCTTCAAGGATACATTTCCAGACGAGTTGCTTGC-CTCTGTATTGAGAGCATTGA 272
||||| |||||||||||||| ||| || || ||||| || | |||| ||||| |||||||
Sbjct 352 TGGCAACTTCAAGGATACATATCCTGATGATTTGCTCGCAC-CTGTTTTGAGGGCATTGA 410
Query 273 TAGAGAAAACTAATGTAAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGG 332
||||||| || ||| |||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 411 TAGAGAAGACAAATCTAAACCCAAGTGAAGTAGGGGACATTGTTGTGGGTACTGTTTTGG 470
Query 333 GACCAGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCG 392
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 471 CACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGTCTGCGTTCTATGCTGGTTTCCCTG 530
Query 393 AAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTG 452
|||| || | ||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 531 AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTG 590
Query 453 ATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGT 512
| || ||||||||||| |||||||| ||||||||||||||||| || |||||| ||||||
Sbjct 591 ACGTAGCCGCTGCCATTAAAGCTGGATTTTATGACATTGGTATCGGGGCTGGGTTGGAGT 650
Query 513 CCATGACAACTAATCCAAGGG-GATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTT 571
||||||| || ||||||| || | ||| |||| |||||||||||| |||||| |||||
Sbjct 651 CCATGACTACCAATCCAATGGCG-TGGGAAGGGTCAGTCAACCCAGCGGTGAAGCAGTTT 709
Query 572 GAACAAGCTCACAATTGCCTTCTTCCAATGGGTATTACTTCAGAAAATGTAGCACACCGG 631
| |||||| || ||||| |||||||| |||||| |||||||||||||||||||||| ||
Sbjct 710 GTACAAGCACAGAATTGTCTTCTTCCTATGGGTGTTACTTCAGAAAATGTAGCACAACGC 769
Query 632 TTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCT 691
||| ||| |||||| ||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 770 TTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCT 829
Query 692 TCTGCTACTGCTTCCGG-AAAGTTTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGT 750
||||||||||| | || ||| || ||||||||||| | ||||| || |||||| ||||
Sbjct 830 GCTGCTACTGCTGCTGGTAAA-TTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGT 888
Query 751 TGACCCAAAGACAGGTGATGAGAAACCCATAACAGTTTCTGTGGATGATGGGATTCGACC 810
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |||||
Sbjct 889 TGACCCAAAGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACC 948
Query 811 TAAC-ACAACCCTTTCCGGACTTGCAAAGCTGAAGCCAGTGTTTAAGGAAG-ACGGAACC 868
||| ||||| ||| | |||| ||||||||||||||||||||| ||| | || |||
Sbjct 949 -AACCACAACTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAG-AAGGATGGCACC 1006
Query 869 ACAACTGCTGGGAATTCTAGCCAATTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGG 928
||||||||||| ||||| |||||| ||||||| ||||| |||||||||||||| |||| |
Sbjct 1007 ACAACTGCTGGAAATTCGAGCCAAGTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAAG 1066
Query 929 AGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCA 988
|||| ||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1067 AGAAGTGTTGCAATGCAAAAAGGACTTCCTGTTCTTGGTGTATTCAGGACATTTGCTGCA 1126
Query 989 GTTGGTGTGGACCCAGCCATCATGGGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTC 1048
|||||||| ||||| || |||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1127 GTTGGTGTTGACCCTGCAATCATGGGTATTGGTCCAGCAGTTGCCATTCCTGCTGCAGTT 1186
Query 1049 AAGGCAGCTGGTTTAGAACTCAATGACGTCGACTTGTTTGAGATTAACGAGGCATTTGCA 1108
|||||||||||||||||||| ||||| | |||||||||||||| || ||||||||||||
Sbjct 1187 AAGGCAGCTGGTTTAGAACTTGATGACATTGACTTGTTTGAGATCAATGAGGCATTTGCA 1246
Query 1109 TCTCAGTTTGTTTATTGTCGGAACAAGCTCGGG-CTAGACGCGGA-AAAGATCAATGTCA 1166
||||||||||||||||| || ||||| | ||| || ||| | || ||| ||||||||||
Sbjct 1247 TCTCAGTTTGTTTATTGCCGTAACAAATT-GGGACTTGACCCAGAGAAA-ATCAATGTCA 1304
Query 1167 ATGGAGGAGCCATAGCCATTGGACATCCCTTGGGCGCTACAGGAGC-CAGATGCGTTGCG 1225
| ||||| || || ||||| || ||||| ||||||||||||||||| | | || |||||
Sbjct 1305 ACGGAGGCGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGC-GTTGTGTTGCT 1363
Query 1226 ACGCTGCTGCATGAGATGAAACGACGTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAATG 1285
|| || |||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||
Sbjct 1364 ACATTGTTGCACGAGATGAAACGCCGTGGAAAAGACTGCCGTTTTGGAGTAGTGTCAATG 1423
Query 1286 TGTATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAG 1345
|| || || |||| ||||| ||||| ||||||||||||||||||| || || ||||||
Sbjct 1424 TGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAG 1483
Query 1346 CT 1347
||
Sbjct 1484 CT 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5