BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04710.1 Length=1595 Score E Sequences producing significant alignments: (Bits) Value Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 2056 0.0 Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 1269 0.0 > Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 Length=1394 Score = 2056 bits (1113), Expect = 0.0 Identities = 1283/1364 (94%), Gaps = 15/1364 (1%) Strand=Plus/Plus Query 116 GCCTCAGCTTGCTTGTCCAAAGACAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 175 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GCCTCACCTTGCTTGGCCAAAGAAAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 60 Query 176 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATACATT- 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATAC-TTA 119 Query 235 TCCAGACGAGTTGCTTGCCTCTGTATTGAGAGCATTGATAGAGAAAACTAATGTAAACCC 294 ||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||| Sbjct 120 CCCAGATGAGTTGCTTGCATCTGTATTGAGAGGATTGATAGAGAAAACAAATGTTAACCC 179 Query 295 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAG 354 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAC 239 Query 355 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCGAAACTGTTCCCATCAGAACCGT 414 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 240 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGAAACTGTTCCAATCAGAATCGT 299 Query 415 GAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGC 474 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||| Sbjct 300 GAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCTGACGTCGCCGCTGCCATAAGAGC 359 Query 475 TGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 419 Query 535 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCTCACAATTGCCTTCT 594 ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 420 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCACATAGTTGCCTTCT 479 Query 595 TCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 654 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 480 TCCAATGGGTATTACTTCAGAGAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 539 Query 655 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGG-AAAGT 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 540 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGGTAAA-T 598 Query 714 TTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGTTGACCCAAAGACAGGTGATGAGA 773 |||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 599 TTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGTTGACCCAAAAACAGGTGATGAGA 658 Query 774 AACCCATAACAGTTTCTGTGGATGATGGGATTCGACCTAACACAACCCTTTCCGGACTTG 833 || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 659 AATCCATAACCGTTTCTGTGGATGATGGGATACGACCTAACACAACCCTTTCCGGACTTG 718 Query 834 CAAAGCTGAAG-CCAGTGTTTAAGGAAGACGGAACCACAACTGCTGGGAATTCTAGCCAA 892 ||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 719 CAAAGCT-AAGACCAGTGTTTAAGGAAGACGGTACCACAACTGCTGGAAATTCTAGCCAA 777 Query 893 TTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGC 952 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 778 TTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAGGAGAAATGTCGCAATGCAGAAAGGC 837 Query 953 CTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCAGTTGGTGTGGACCCAGCCATCATG 1012 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 838 CTTCCCATTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTGGACCCAGCCATCATG 897 Query 1013 GGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTCAAGGCAGCTGGTTTAGAACTCAAT 1072 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 898 GGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGTCAAGGCGGCTGGTTTAGAACTCAAT 957 Query 1073 GACGTCGACTTGTTTGAGATTAACGAGGCATTTGCATCTCAGTTTGTTTATTGTCGGAAC 1132 ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 958 GACATCGACTTGTTTGAGATCAACGAGGCGTTTGCATCTCAGTTTGTTTATTGTCGGAAC 1017 Query 1133 AAGCTCGGGCTAGACGCGGAAAAGATCAATGTCAATGGAGGAGCCATAGCCATTGGACAT 1192 ||| | ||| | ||| |||||||| |||||||||||||||| ||||||||||| |||||| Sbjct 1018 AAGTTGGGGATTGACCCGGAAAAGGTCAATGTCAATGGAGGGGCCATAGCCATCGGACAT 1077 Query 1193 CCCTTGGGCGCTACAGGAGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGACGT 1252 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | | Sbjct 1078 CCCTTGGGTGCTACAGGCGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGCCTT 1137 Query 1253 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGTATAGGTTCGGGAATGGGAGCAGCC 1312 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1138 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGCATAGGTTCGGGAATGGGAGCAGCC 1197 Query 1313 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGTGATGTCCGGAAAGTCTAATGA 1372 |||||||||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 1198 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGCGATGTCCGGAAAGT--AG-GA 1254 Query 1373 CAATAAGGCCTTTTGACCAAGGACCCTAGCTAAGGA-C-----CAAATTAGAACACAGTA 1426 | ||||||||||||||||||||| ||||||| ||| | |||||||||||||| || Sbjct 1255 CTATAAGGCCTTTTGACCAAGGAACCTAGCTTAGGGGCTTTTACAAATTAGAACACACTA 1314 Query 1427 CTACAAATAAACATTATCACAAATAAATGCGTTCTAGATGAATA 1470 |||||||||||||| || |||||||| ||| || |||||||||| Sbjct 1315 CTACAAATAAACATCATTACAAATAAGTGCTTTATAGATGAATA 1358 > Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 Length=1769 Score = 1269 bits (687), Expect = 0.0 Identities = 1033/1202 (86%), Gaps = 16/1202 (1%) Strand=Plus/Plus Query 154 ATATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACG 213 |||||||||||||||||| |||||||||||||| |||||| |||| |||||| | ||||| Sbjct 292 ATATGGAGATGATGTTGTGATTGTCGCGGCACATAGGACTCCACTATGCAAGTCTAAACG 351 Query 214 TGGCAGCTTCAAGGATACATTTCCAGACGAGTTGCTTGC-CTCTGTATTGAGAGCATTGA 272 ||||| |||||||||||||| ||| || || ||||| || | |||| ||||| ||||||| Sbjct 352 TGGCAACTTCAAGGATACATATCCTGATGATTTGCTCGCAC-CTGTTTTGAGGGCATTGA 410 Query 273 TAGAGAAAACTAATGTAAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGG 332 ||||||| || ||| |||||||||||||||| || |||||||| |||||||||||||||| Sbjct 411 TAGAGAAGACAAATCTAAACCCAAGTGAAGTAGGGGACATTGTTGTGGGTACTGTTTTGG 470 Query 333 GACCAGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCG 392 ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 471 CACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGTCTGCGTTCTATGCTGGTTTCCCTG 530 Query 393 AAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTG 452 |||| || | ||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 531 AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTG 590 Query 453 ATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGT 512 | || ||||||||||| |||||||| ||||||||||||||||| || |||||| |||||| Sbjct 591 ACGTAGCCGCTGCCATTAAAGCTGGATTTTATGACATTGGTATCGGGGCTGGGTTGGAGT 650 Query 513 CCATGACAACTAATCCAAGGG-GATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTT 571 ||||||| || ||||||| || | ||| |||| |||||||||||| |||||| ||||| Sbjct 651 CCATGACTACCAATCCAATGGCG-TGGGAAGGGTCAGTCAACCCAGCGGTGAAGCAGTTT 709 Query 572 GAACAAGCTCACAATTGCCTTCTTCCAATGGGTATTACTTCAGAAAATGTAGCACACCGG 631 | |||||| || ||||| |||||||| |||||| |||||||||||||||||||||| || Sbjct 710 GTACAAGCACAGAATTGTCTTCTTCCTATGGGTGTTACTTCAGAAAATGTAGCACAACGC 769 Query 632 TTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCT 691 ||| ||| |||||| ||||||| ||||||||||||||||| || ||||||||||| ||| Sbjct 770 TTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCT 829 Query 692 TCTGCTACTGCTTCCGG-AAAGTTTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGT 750 ||||||||||| | || ||| || ||||||||||| | ||||| || |||||| |||| Sbjct 830 GCTGCTACTGCTGCTGGTAAA-TTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGT 888 Query 751 TGACCCAAAGACAGGTGATGAGAAACCCATAACAGTTTCTGTGGATGATGGGATTCGACC 810 |||||||||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct 889 TGACCCAAAGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACC 948 Query 811 TAAC-ACAACCCTTTCCGGACTTGCAAAGCTGAAGCCAGTGTTTAAGGAAG-ACGGAACC 868 ||| ||||| ||| | |||| ||||||||||||||||||||| ||| | || ||| Sbjct 949 -AACCACAACTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAG-AAGGATGGCACC 1006 Query 869 ACAACTGCTGGGAATTCTAGCCAATTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGG 928 ||||||||||| ||||| |||||| ||||||| ||||| |||||||||||||| |||| | Sbjct 1007 ACAACTGCTGGAAATTCGAGCCAAGTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAAG 1066 Query 929 AGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCA 988 |||| ||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 1067 AGAAGTGTTGCAATGCAAAAAGGACTTCCTGTTCTTGGTGTATTCAGGACATTTGCTGCA 1126 Query 989 GTTGGTGTGGACCCAGCCATCATGGGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTC 1048 |||||||| ||||| || |||||||| |||| ||||| |||||||||||||||||||| Sbjct 1127 GTTGGTGTTGACCCTGCAATCATGGGTATTGGTCCAGCAGTTGCCATTCCTGCTGCAGTT 1186 Query 1049 AAGGCAGCTGGTTTAGAACTCAATGACGTCGACTTGTTTGAGATTAACGAGGCATTTGCA 1108 |||||||||||||||||||| ||||| | |||||||||||||| || |||||||||||| Sbjct 1187 AAGGCAGCTGGTTTAGAACTTGATGACATTGACTTGTTTGAGATCAATGAGGCATTTGCA 1246 Query 1109 TCTCAGTTTGTTTATTGTCGGAACAAGCTCGGG-CTAGACGCGGA-AAAGATCAATGTCA 1166 ||||||||||||||||| || ||||| | ||| || ||| | || ||| |||||||||| Sbjct 1247 TCTCAGTTTGTTTATTGCCGTAACAAATT-GGGACTTGACCCAGAGAAA-ATCAATGTCA 1304 Query 1167 ATGGAGGAGCCATAGCCATTGGACATCCCTTGGGCGCTACAGGAGC-CAGATGCGTTGCG 1225 | ||||| || || ||||| || ||||| ||||||||||||||||| | | || ||||| Sbjct 1305 ACGGAGGCGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGC-GTTGTGTTGCT 1363 Query 1226 ACGCTGCTGCATGAGATGAAACGACGTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAATG 1285 || || |||| ||||||||||| ||||| |||||||| |||||||| |||||||||||| Sbjct 1364 ACATTGTTGCACGAGATGAAACGCCGTGGAAAAGACTGCCGTTTTGGAGTAGTGTCAATG 1423 Query 1286 TGTATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAG 1345 || || || |||| ||||| ||||| ||||||||||||||||||| || || |||||| Sbjct 1424 TGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAG 1483 Query 1346 CT 1347 || Sbjct 1484 CT 1485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59763594405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5