BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04730.1
Length=2921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919161 jgi|Araly1|919161|scaffold_100442.1 2902 0.0
> Ahg919161 jgi|Araly1|919161|scaffold_100442.1
Length=2862
Score = 2902 bits (1571), Expect = 0.0
Identities = 1865/1997 (93%), Gaps = 60/1997 (3%)
Strand=Plus/Plus
Query 1 ATGGAATTCGATATCCCATTGCCGGAGGAGCTTGAGCTTCTAGAAGCCAATTCTCATTTC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAATTCGATATCCCATTGCCGGAAGAGCTTGAGCTTCTAGAAGCCAATTCTCATTTC 80
Query 61 TACGAAGAAGAAGATGA-G--TACCTAAACTTTGAGGAGCCGCCATATCCTTACCCAATC 117
|| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||||
Sbjct 81 TATGAAGAAGAAGAAGACGACTACCTAAACTTCGAGGAGCCGCCATATCCTTACCCAATT 140
Query 118 GACGGCGATGAAGAAAAGGAAGAAGAACGCGTCGCGCACAAGGAGCCTCATGTCCGACAA 177
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 141 GACGGCGATGAAGAAAAAGAAGAAGAACGCGTCGCGCAGAAGGAGCCTCATGTCCGACAA 200
Query 178 TCGGAATCTTCTGATATCAAGGGTTGTAAACGACCCAGGAGTCTAATTTCCGATCCGATT 237
|||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 201 TCGGAATCATCTGATATCAACGGTTGTAAACGACCCAGGAGTCTAATCTCCGATCCGATG 260
Query 238 GTGAATCTCGACGAAGTCTCTCCAGCTTCTGATAAGAGAAGCAAAATTGATGATAACCGG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 261 GTGAATCTCGACGAAGTCTCTCCAGCTTCTGATAAGAGAAGCAAAATTGATGCTAACCGG 320
Query 298 GTAGAAATTGAAGATGAGGATTGGTTACGCTTCTCTCCGGTTAAGGAAGTAGTTCACGTT 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 321 GTAGAAATTGAAGATGAGGATTGGTTACGCTTCTCGCCGGTTAAGGAAGTAGTTCACGTT 380
Query 358 ATGGAGGAGGAAGAAGAAGTTGTCATTCCCCAGGAG---A-------C--T-A--T-G-- 399
|| ||||||||||||||||||||||||||||||| | | | | | |
Sbjct 381 AT---GGAGGAAGAAGAAGTTGTCATTCCCCAGGAGACTATTTTGTCCAGTAATCTCGTT 437
Query 400 -TT-G----TCCAGATACGCTTCTGAGATAGATGGGGAATGC-TTCCCAATCACAGCACC 452
|| | | ||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 438 ATTGGAATTTGCAGATACGCTTCTGAGATAGATGGGGAATGCGTT-CCGATCACGGCACC 496
Query 453 TGACGGAGGAGATAGGGTTTATGCGAAATTCTGCCGGGCTTTGGGAGATGAAGAGGTGAA 512
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 GGACGGAGGAGAGAGGGTTTATGCGAAATTCTGCCGGGCTTTAGGAGATGAAGAGGTGAA 556
Query 513 CAAATTGGATGTGAAAGACAAATCTAATGGTCTTATTAAAGATCCTATCAGTGTTCTTTT 572
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||||||||
Sbjct 557 GAAATTGGATGTGAATGACAAGTCTCATGGGCTTATTAAAGATCCAATCAGTGTTCTTTT 616
Query 573 GCAGCAATCAGAGAAAGAGGCATTTAACAAGGTCTTGCAAGCTAGTTCTGAAGATCAGAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GCAGCAATCAGAGAAAGAGGCATTTAACAAGGTCTTGCAAGCTAGTTCTGAAGATCAGAA 676
Query 633 TGAAACCATTTCTGCAGAAACGTCTGTAATGCATGAGAAACTCTGGGTGGACAAATATTC 692
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 677 TGAAACCATTTCTGCAGAAGCATCTGTAATGCATGAGAAACTCTGGGTAGACAAATATTC 736
Query 693 TCCGAGCTCCTTCACTGAGCTTCTCAGTGATGAGCAAACCAATCGAGAGGTTCTGTTATG 752
||| ||||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 737 TCCAAGCTCATTTACTGAGCTTCTTAGTGATGAGCAGACCAATCGAGAGGTCCTGTTATG 796
Query 753 GCTTAAGCAGTGGGATGCTTCTGTTTTTGGATCTGAAATTAGGAGCACGACAGAGGCAGT 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 797 GCTTAAGCAGTGGGATGCTTCTGTTTTTGGATCTGAAATTAGGAGCACGACAGAGGAAGT 856
Query 813 ATTGTCAGCTTTGAAACGACATTCTACCACAAGTCATCATCAGAAATCGGATTCAGCTTT 872
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 857 ATTGTCAGCTTTGAAACGACATTCTACCTCAAGTCATCATCAAAAATCGGATTCAGCTTT 916
Query 873 TACAAGGAAAAAACAGTTCAATAGATGGAGTAAGGAGAGTTTTGGATATTCTAAAAATGC 932
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 917 TACAAGGAAAAAGCAGTTCAATAGATGGAGTAAGGAGAGTTTTAGATATCCTAAAAATGC 976
Query 933 AGAAGTGAGCAATACCAACACTGCAGATATTAATGACTTGTGGAACAAAAAGTCCAAACT 992
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 977 AGACGTGAGCAATACCAACACTGCAGATAATAATGACTTGTGGAACAAAAAGTCAAAACT 1036
Query 993 TACTGGTCCTCCTGAACAAAAGATCCTTCTGCTCTGTGGTGCCCCCGGACTTGGAAAGAC 1052
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1037 TACTGGTCCTCCTGAGCAAAAGATCCTTCTGCTTTGTGGTGCCCCTGGACTTGGAAAGAC 1096
Query 1053 AACGCTTGCTCACATTGCAGCTAAGCATTGTGGATATCGCGTTGTTGAGATCAATGCTAG 1112
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 AACGCTTGCTCACATTGCAGCTAAGCATTGTGGATATCGTGTTGTTGAGATCAATGCTAG 1156
Query 1113 TGACGAGCGATCAGCATCAGCTATTGAAACTAGAATTCTTGATGTAGTTCAGATGAACTC 1172
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1157 CGACGAGCGATCAGCATCAGCCATTGAAACTAGAATTCTTGACGTAGTTCAGATGAACTC 1216
Query 1173 TGTCACAGCTGATTCTAGACCTAAATGTTTGGTGATTGATGAGATAGATGGAGCTCTTGG 1232
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GGTTACAGCTGATTCTAGACCTAAATGTTTGGTGATTGATGAGATAGATGGAGCTCTTGG 1276
Query 1233 TGATGGAAAAGGAGCAGTTGATGTTATTCTTAAGATGGTGTTGGCAGAAAGAAAACATGC 1292
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1277 TGATGGAAAAGGAGCAGTTGATGTTATTCTAAAGATGGTGTTGGCAGAAAGAAAGCATGC 1336
Query 1293 TACAGGCAAGGAAAATGTAGAGAATGTAAAGACTTCCTCGAAGAAGGACCGCCGAACAGC 1352
||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1337 TACTGGCAAGGAAAATATAGAGAATGTAAAGACTTCCTCGAAGAAGGAGCGCCGAACAGC 1396
Query 1353 ACCACTATCAAGACCTGTCATTTGTATATGTAATGATTTATATGCACCAGCACTAAGACC 1412
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1397 ACCACTATCAAGACCTGTGATTTGTATATGTAATGATTTATATGCACCAGCACTTAGGCC 1456
Query 1413 TCTGCGACAGATAGCAAAGGTTCATATATTTGTTCAACCAACAGTGAGTCGTGTGGTAAA 1472
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1457 TCTGCGACAGATAG----G-TTCATATATTTGTTCAACCAACGGTGAGTCGTGTGGTAAA 1511
Query 1473 CAGGCTCA-A-GTA--CA--T--C----T---GTA-AT-----AT--GGAGGGTATGAAA 1509
|||||| | | || || | | | ||| || || |||||| ||||||
Sbjct 1512 CAGGCTGAGATGTGTGCAAATGACAGGCTCAAGTATATCTGTTATATGGAGGGGATGAAA 1571
Query 1510 GCAAGATCATTCGCTCTTAGTGCTCTTGCGGAGTACACTGAATGTGACATTCGCTCTTGC 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 GCAAGATCATTCGCTCTTAGTGCTCTTGCGGAGTACACTGAATGTGACATTCGCTCTTGC 1631
Query 1570 TTGAACACTCTGCAATTTCTCTACAAGAAGAAAGAAACCATCAATGTGATTGACATTGGA 1629
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TTGAACACACTGCAATTTCTCTACAAGAAGAAAGAAACCATCAATGTGATTGACATTGGA 1691
Query 1630 TCTCAAGTTGTTGGGCGGAAAGACATGTCAAAGAGTCTGTTTGATATCTGGAAAGAGATA 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TCTCAAGTTGTTGGGCGGAAAGACATGTCAAAGAGTCTGTTTGATATCTGGAAAGAGATA 1751
Query 1690 TTCACCACGAGAAAAATGAAACGAGAACGATCTAATGACGCTTCTGGCAGTGGGGCCAAA 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 TTCACCACGAGAAAAATGAAACGAGAACGATCTAATGACGCTTCTGGCAGTGGGGCCAAA 1811
Query 1750 AACTTTGACTTCTTACACTCTCTCGTGTCCAGTCGGGGTGATTATGATTTGATTTTCGAT 1809
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1812 AACTTTGACTTCTTACACACTCTCGTATCCAGTCGGGGTGATTATGATTTGATTTTTGAT 1871
Query 1810 GGTATACATGAAAACATTTTGCAGCTCCACTACCATGATCCAGTGATGGACAAGACAATC 1869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GGTATACATGAAAACATTTTGCAGCTCCACTACCATGATCCAGTGATGGACAAGACAATT 1931
Query 1870 AGCTGCTTGGACGGTCTTGGAACTTCTGATTTGCTGCATCGATACATAATGCGCACTCAG 1929
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1932 AGCTGCTTGGACTGTCTTGGAACTTCTGATTTGCTGCATCGATACATATTGCGCACCCAG 1991
Query 1930 CAAATGCCTCTCTATGT 1946
|||||||||||||||||
Sbjct 1992 CAAATGCCTCTCTATGT 2008
Score = 1258 bits (681), Expect = 0.0
Identities = 783/830 (94%), Gaps = 15/830 (2%)
Strand=Plus/Plus
Query 2031 CAGATGTCGAACACTTTTGGTAGAAAAGCAGGAGTCTCTGCGGTCTTGGCACCACAAGAT 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CAGATGTCGAACACTTTTGGTAGAAAAGCAGGAGTCTCTGCGGTCTTGGCACCACAAGAT 2089
Query 2091 ACCTCCCTATATTGGAAGGCATTTGTCAATCAAGTCTTTCGTAGAAGACTCTATTTCCCC 2150
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 ACCTCCCTATATTGGGAGGCATTTGTCAATCAAGTCTTTCGTAGAAGACTCTATTTCCCC 2149
Query 2151 GCTATTGCATATTCTTTCTCCCCCAACTCTTAGACCGGTGGCATCGCATTTGCTATCAGA 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GCTATTGCATATTCTTTCTCCCCCAACTCTTAGACCGGTGGCATCGCATTTGCTATCAGA 2209
Query 2211 TAGGCAAAAGGAACAACTGGCGGGTTTGGTCATGCTTATGTGTTCTTATTCTTTGACTTA 2270
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TAGGCAAAAGGATCAACTGGCGGGTTTGGTCATGCTTATGTGTTCTTATTCTTTGACTTA 2269
Query 2271 TAAGAATGTGAAATCTGATCCTGTTCTAAGTAGCCTCAGGGAGGATGCTGCTTCAGATGC 2330
||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||
Sbjct 2270 TAAGAATGTGAAATCTGATCCTGGTCTGAGTAACCTCAGGGATGATGCTGCTTCAGATGC 2329
Query 2331 TTTAGTTCTTGCTTTAGATCCACATCTATTTGATTTCATTAATTTCAAGGGTCACCAATT 2390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 TTTAGTTCTTGCTTTAGATCCACATCTATTTGATTTCATTAATTTCAAGGGTCACCAATT 2389
Query 2391 TAAACATCATGTACTCGCCTTAGCGATGAAACAAGTGTTGGTACATGAAGT---TG-AGA 2446
||||||||| |||||||||||||| |||||||||||||||||||||||| | || |||
Sbjct 2390 TAAACATCACGTACTCGCCTTAGCAATGAAACAAGTGTTGGTACATGAACTGCATGGAGA 2449
Query 2447 AGCAA-A----A-GATACTGCAAGCAAGTGGAGGAAAGTCCGGGATCTTGAACAAACCCG 2500
| | | ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 2450 T-CTTGATTGTATGATACTGCAAGCAAGTGGAGGAAGGTCCGGGATCCTGAACAAACCCG 2508
Query 2501 AAATTAAGAAAATAAATCAAGACTTAGCGAAG-AAAACCAATGCTGCAGCAAATGAAAGT 2559
|||| |||||||||||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct 2509 AAATCAAGAAAATAAATCAAGACCTAGC-AAGGAAAAGAAATGCTGCAGCAAATGAAAGT 2567
Query 2560 CAAAGAACCCCAGT-TACCTCTAAACCTCCGTCGGTTTCAGTTGGGACTGCGACAACATC 2618
||||||| ||| | | |||||||||||||||| || |||||||||| ||| ||||| ||
Sbjct 2568 CAAAGAAATCCAATCT-CCTCTAAACCTCCGTCAGTCTCAGTTGGGATTGCCACAACTTC 2626
Query 2619 AAAACCTAATTCTAGTGATGTGAAAAAGGCATCTCGCAACGCCCTTAATTTCTTCGACAG 2678
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2627 AAAACCTAATTCTAGTGATGTGAAAAAGGCATCTCGCACCGCCCTTAATTTCTTCGACAG 2686
Query 2679 GTTTAGGAAGTCAAGGAAAGATTATGAAGATCCAGAGGATGTACAAAATCGAGCAACTGC 2738
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2687 GTTTAGGAAGTCAAGGAAAGATTATGAAGATCCAGAGGATGTACAAAAGCGAGCAACTGC 2746
Query 2739 AAAAAGAGATTCACGTCCTCTTCTCTTCAAGTTTAACGAGGGTTTCACAAATGCTGTGAA 2798
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 AAAAAGAGATTCAAGACCTCTTCTCTTCAAGTTTAACGAGGGTTTCACAAATGCTGTGAA 2806
Query 2799 GAGACCCGTTAGAATGCGGGAGTTTCTACTATGATTCTGCAACGAAGTCA 2848
|||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2807 GAGACCAGTTAGAATGCGGGAGTTTCTACTATGATTCTGCAATGAAGTCA 2856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110271259275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5