BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04750.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919162 jgi|Araly1|919162|scaffold_100443.1 1225 0.0
Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2 590 1e-167
> Ahg919162 jgi|Araly1|919162|scaffold_100443.1
Length=700
Score = 1225 bits (663), Expect = 0.0
Identities = 688/700 (98%), Gaps = 1/700 (0%)
Strand=Plus/Plus
Query 121 GAGATTTAAGGTAAAGAAAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGC 180
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GAGATTT-AGGTAAAGAGAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGC 59
Query 181 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 119
Query 241 CAGTGCCTCCAGAAGCTTCCGTCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCAT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CAGTGCCTCCAGAAGCTTCCGTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCAT 179
Query 301 ACCTTCAATTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCTTCAACTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 239
Query 361 GGGAGGCAAATTCCCATGTCCTTTTTGGAAAGAGTAAAAGAAGATTTTAACAAGCGATAT 420
|||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 240 GGGAGGCAAATTCCGATGGCCTTTTTGGAAAGAGTAAAAGAGGATTTTAACAAGAGATAT 299
Query 421 GGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTGGTGGAAAAGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 359
Query 481 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAG 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCAGATGAGATTAGCAAGCTTGCTAAG 419
Query 541 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 479
Query 601 GACCGTGGTGAGAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACCGTGGTGAAAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 539
Query 661 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 599
Query 721 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 659
Query 781 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 820
||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 699
> Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2
Length=1513
Score = 590 bits (319), Expect = 1e-167
Identities = 410/454 (90%), Gaps = 6/454 (1%)
Strand=Plus/Plus
Query 332 CCTATTGTGTTGTTGCGGTTGATTCTGCTGGGAGGCAAATTCCCATGTCCTTT-TTGGAA 390
|||||||||||||||| ||||||||||||||||| || ||||| ||| |||| ||||||
Sbjct 833 CCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGACAGATTCCTATG-GCTTTCTTGGAA 891
Query 391 AGAGTAAAAGAAGATTTTAACAAGCGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCA 450
|||| || || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 892 CGAGTGAAGGAGGATTTTAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCC 951
Query 451 AACAGCTTGAATAAGGAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGAT 510
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 952 AACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGAT 1011
Query 511 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGT 570
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1012 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCTCAAGTGTCTGAAGTTAAAGGT 1071
Query 571 GTAATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAGAAAATTGAGCTTTTGGTG 630
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1072 GTTATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGTGAGAAAATTGAGCTTCTGGTG 1131
Query 631 GACAAAACCGAAAATCTTCGCTCACAGGCACAAGATTTCAGAACAACA-GGAACGCAGAT 689
|||||||||||||| ||||| |||||||| ||||||||||||||| || ||||| || ||
Sbjct 1132 GACAAAACCGAAAACCTTCGTTCACAGGCGCAAGATTTCAGAACA-CAAGGAACTCAAAT 1190
Query 690 GAGAAGAAAGATGTGGCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTAT 749
|||||| ||||||||| |||||||||||||||||||||| || || || || ||||| ||
Sbjct 1191 GAGAAGGAAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTTGCAATCATCAT 1250
Query 750 CGCACT-GATTCTCATCATCGTGCTCTCAGTTTG 782
|| || ||||||||||||| | ||||| |||||
Sbjct 1251 TGC-CTTGATTCTCATCATCATCCTCTCGGTTTG 1283
Score = 257 bits (139), Expect = 1e-67
Identities = 173/190 (91%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 142 ATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGCGGCACGGTGATCCTCGTTGAG 201
|||||||||||||||||||||||||||||||| ||||| || || || ||||| || |||
Sbjct 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672
Query 202 TTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCCAGAAGCTTCCG 261
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732
Query 262 TCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAATTACCTTGTCGAA 321
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792
Query 322 GATGGATTCA 331
|||||||||
Sbjct 793 AATGGATTCA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5