BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04760.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919163 jgi|Araly1|919163|scaffold_100444.1 1142 0.0
Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1 765 0.0
> Ahg919163 jgi|Araly1|919163|scaffold_100444.1
Length=703
Score = 1142 bits (618), Expect = 0.0
Identities = 648/663 (98%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 1 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 80
Query 61 TATACCGAGTTCAAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCCG 120
|||||||| |||||||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 81 TATACCGAATTCAAGGGCAATTTTACGTCCGTCGCTGCTCAGTGCCTCCAGAAACTTCCG 140
Query 121 TCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 180
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCATCGAACAACAAGTTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 200
Query 181 AATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATGGCT 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 201 AATGGCTTCACCTATTGTGTTGTTGTTGTTGAATCTGCTGGGAGGCAGATACCAATGGCT 260
Query 241 TTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCCACT 300
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 261 TTCTTGGAGAGAGTCAAGGAGGATTTCAGCAAGAGATACGGTGGTGGAAAGGCTTCCACT 320
Query 301 GCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCTAAAGCCAACAGCTTAAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 380
Query 361 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACTGAA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 381 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAGGTTAAGGCTCAGGTGACTGAA 440
Query 421 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATCGAG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 441 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGTGAGAAAATCGAG 500
Query 481 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 560
Query 541 ACAAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 561 ACAAAGATGAAAAGAAAGTTGTGGTTTGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 620
Query 601 ATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATCATCGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 680
Query 661 TAA 663
|||
Sbjct 681 TAA 683
> Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1
Length=1159
Score = 765 bits (414), Expect = 0.0
Identities = 586/669 (88%), Gaps = 12/669 (2%)
Strand=Plus/Plus
Query 1 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 60
|||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 192 ATGGGACAGCAAAATTTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCGCCGAG 251
Query 61 TATACCGAGTTC-AAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCC 119
||||| || ||| ||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 252 TATACAGAATTCAAAGGG-AATTTCACTTCTGTCGCTGCTCAGTGTCTCCAGAAACTTCC 310
Query 120 GTCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACAC-TTTCAATTATCTCGCT- 177
|| ||||| ||||| ||||| ||||| ||||| ||||| || ||| ||||| |||| |
Sbjct 311 TTCTTCGAATAACAAGTTTACATACAACTGCGATGGTCATACGTTT-AATTACCTCG-TC 368
Query 178 GATAATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATG 237
|| |||||||| || ||||||||||||| | ||||||||| |||||||||||| ||||||
Sbjct 369 GAAAATGGCTTTACTTATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGATTCCAATG 428
Query 238 GCTTTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCC 297
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 429 GCTTTCTTGGAGAGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGTGGAAAGGCTACC 488
Query 298 ACTGCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAG 357
|||||| |||||||||||||||||| ||| || ||||| |||||||||||||||||||||
Sbjct 489 ACTGCTCAAGCCAACAGCTTGAACAGAGAGTTTGGGTCGAAATTGAAGGAGCACATGCAG 548
Query 358 TACTGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACT 417
||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 549 TACTGTGTGGATCACCCTGATGAGATTAGCAAACTTGCCAAAGTTAAGGCTCAGGTGACT 608
Query 418 GAAGTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATC 477
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 609 GAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTGAGAAAATT 668
Query 478 GAGCTAT-TAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACA 536
||||| | |||| || ||||||||||||||||| ||||||||||||||||| ||| | ||
Sbjct 669 GAGCT-TCTAGTTGATAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCAGAGCGCA 727
Query 537 AGGAAC-AAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGAT-AAAGCTCATAGTC 594
|||||| ||| |||| ||||||| ||||||| || ||||||||||| ||| |||||||||
Sbjct 728 AGGAACGAAA-ATGAGAAGAAAGATGTGGTTTGACAACATGAAGATTAAA-CTCATAGTC 785
Query 595 TTTGGCATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAG 654
| || ||||| | | ||||||||||||||||| | ||||||||| || | ||||
Sbjct 786 CTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCGGTTTGCGGGGGATACAAG 845
Query 655 TGTACTTAA 663
||||| |||
Sbjct 846 TGTACCTAA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5