BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04760.1 Length=663 Score E Sequences producing significant alignments: (Bits) Value Ahg919163 jgi|Araly1|919163|scaffold_100444.1 1142 0.0 Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1 765 0.0 > Ahg919163 jgi|Araly1|919163|scaffold_100444.1 Length=703 Score = 1142 bits (618), Expect = 0.0 Identities = 648/663 (98%), Gaps = 0/663 (0%) Strand=Plus/Plus Query 1 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 80 Query 61 TATACCGAGTTCAAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCCG 120 |||||||| |||||||||||||| || |||||||| |||||||| ||||||||||||||| Sbjct 81 TATACCGAATTCAAGGGCAATTTTACGTCCGTCGCTGCTCAGTGCCTCCAGAAACTTCCG 140 Query 121 TCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 180 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TCATCGAACAACAAGTTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 200 Query 181 AATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATGGCT 240 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 201 AATGGCTTCACCTATTGTGTTGTTGTTGTTGAATCTGCTGGGAGGCAGATACCAATGGCT 260 Query 241 TTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCCACT 300 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 261 TTCTTGGAGAGAGTCAAGGAGGATTTCAGCAAGAGATACGGTGGTGGAAAGGCTTCCACT 320 Query 301 GCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 360 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 321 GCTAAAGCCAACAGCTTAAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 380 Query 361 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACTGAA 420 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 381 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAGGTTAAGGCTCAGGTGACTGAA 440 Query 421 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATCGAG 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 441 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGTGAGAAAATCGAG 500 Query 481 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 560 Query 541 ACAAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 600 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 561 ACAAAGATGAAAAGAAAGTTGTGGTTTGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 620 Query 601 ATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 660 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 ATCATCGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 680 Query 661 TAA 663 ||| Sbjct 681 TAA 683 > Ahg482195 jgi|Araly1|482195|fgenesh2_kg.4__1255__AT2G32670.1 Length=1159 Score = 765 bits (414), Expect = 0.0 Identities = 586/669 (88%), Gaps = 12/669 (2%) Strand=Plus/Plus Query 1 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 60 |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 192 ATGGGACAGCAAAATTTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCGCCGAG 251 Query 61 TATACCGAGTTC-AAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCC 119 ||||| || ||| ||||| |||||||| || ||||| ||||||||||||||||||||||| Sbjct 252 TATACAGAATTCAAAGGG-AATTTCACTTCTGTCGCTGCTCAGTGTCTCCAGAAACTTCC 310 Query 120 GTCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACAC-TTTCAATTATCTCGCT- 177 || ||||| ||||| ||||| ||||| ||||| ||||| || ||| ||||| |||| | Sbjct 311 TTCTTCGAATAACAAGTTTACATACAACTGCGATGGTCATACGTTT-AATTACCTCG-TC 368 Query 178 GATAATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATG 237 || |||||||| || ||||||||||||| | ||||||||| |||||||||||| |||||| Sbjct 369 GAAAATGGCTTTACTTATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGATTCCAATG 428 Query 238 GCTTTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCC 297 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || Sbjct 429 GCTTTCTTGGAGAGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGTGGAAAGGCTACC 488 Query 298 ACTGCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAG 357 |||||| |||||||||||||||||| ||| || ||||| ||||||||||||||||||||| Sbjct 489 ACTGCTCAAGCCAACAGCTTGAACAGAGAGTTTGGGTCGAAATTGAAGGAGCACATGCAG 548 Query 358 TACTGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACT 417 ||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 549 TACTGTGTGGATCACCCTGATGAGATTAGCAAACTTGCCAAAGTTAAGGCTCAGGTGACT 608 Query 418 GAAGTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATC 477 || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 609 GAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTGAGAAAATT 668 Query 478 GAGCTAT-TAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACA 536 ||||| | |||| || ||||||||||||||||| ||||||||||||||||| ||| | || Sbjct 669 GAGCT-TCTAGTTGATAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCAGAGCGCA 727 Query 537 AGGAAC-AAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGAT-AAAGCTCATAGTC 594 |||||| ||| |||| ||||||| ||||||| || ||||||||||| ||| ||||||||| Sbjct 728 AGGAACGAAA-ATGAGAAGAAAGATGTGGTTTGACAACATGAAGATTAAA-CTCATAGTC 785 Query 595 TTTGGCATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAG 654 | || ||||| | | ||||||||||||||||| | ||||||||| || | |||| Sbjct 786 CTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCGGTTTGCGGGGGATACAAG 845 Query 655 TGTACTTAA 663 ||||| ||| Sbjct 846 TGTACCTAA 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24322421046 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5