BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04770.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919164 jgi|Araly1|919164|scaffold_100445.1 1519 0.0
> Ahg919164 jgi|Araly1|919164|scaffold_100445.1
Length=958
Score = 1519 bits (822), Expect = 0.0
Identities = 917/961 (95%), Gaps = 14/961 (1%)
Strand=Plus/Plus
Query 64 CAGAGACACGA-AGTTTGCGATGATGATGATGATTCAGA-GA-A-GAGGAGGTGAGAGAC 119
|||||| || | ||||||| ||||||||||||||||| || | |||||| ||||||||
Sbjct 2 CAGAGATAC-AGAGTTTGC---GATGATGATGATTCAGAGGAGAGGAGGAGATGAGAGAC 57
Query 120 AAGACTCGTCGGCGGCGGCGTACAACGTTGTCCATAAGTTGCCTCACGGAGACAGTCCTT 179
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAGACTCGGCGGCGGCGACGTACAACGTTGTCCATAAGTTGCCTCACGGAGACAGTCCTT 117
Query 180 ATGTCCGAGCGAAGCATGTTCAGTTGGTGGAGAAAGATGCAGAAGCAGCGATAGAGTTGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGTCCGAGCGAAGCATGTTCAGTTGGTGGAGAAAGATGCAGAAGCAGCGATAGAGTTGT 177
Query 240 TTTGGATAGCGATTAAAGCGAGAGATAGAGTTGATAGTGCTCTTAAAGACATGGCCTTGT 299
|||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 TTTGGAGAGCGATTGAAGCGAGAGATAGAGTGGATAGTGCTCTTAAAGACATGGCCTTGT 237
Query 300 TAATGAAACAACAGAACAGAGCTGAAGAAGCCATTGACGCTATTCAATCCTTTAGAGATC 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 TGATGAAACAACAGAACAGAGCTGAAGAAGCCATTGACGCTATTCAATCCTTTCGAGATC 297
Query 360 TTTGTTCAAGACAAGCTCAAGAGTCATTAGACAATGTCCTCATCGATCTATATAAGAAAT 419
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 298 TTTGTTCCAGACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAAT 357
Query 420 GTGGGAGAATAGAAGAGCAAGTTGAGTTATTGAAGCAAAAGCTTTGGATGATATATCAAG 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GTGGGAGAATAGAAGAGCAAGTTGAGTTACTGAAGCAAAAGCTTTGGATGATATATCAAG 417
Query 480 GAGAAGCATTCAATGGCAAACCAACAAAGACTGCGAGATCTCATGGCAAGAAGTTTCAGG 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GAGAAGCATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGG 477
Query 540 TCACCGTCGAGAAGGAAACCTCTAGGATCTTGGGGAACTTGGGATGGGCTTATATGCAAC 599
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 TCACGGTCGAGAAGGAAACCTCTAGGATCTTGGGGAACTTGGGATGGGCTTATATGCAGC 537
Query 600 TAATGGACTATACAGCAGCTGAAGCTGTGTATCGGAAAGCTCAATTGATAGAGCCAGATG 659
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 538 TAATGGACTATACAGCAGCCGAAGCTGTGTACCGGAAAGCTCAGTTGATAGAGCCAGATG 597
Query 660 CAAACAAGGCTTGCAATTTATGCACATGTCTCATCAAGCAAGGGAAGCACGATGAGGCGA 719
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 CAAACAAGGCTTGTAATTTGTGCACATGTCTCATCAAGCAAGGGAAGCAGGATGAGGCGA 657
Query 720 GGTCGATTCTCTTTCGTGATGTACTAATGGAGAACAAAGAAGGGTCTGGTGATCCGAGGT 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 658 GGTCGATTCTCTTTCGTGATGTACTAATGGATAACAAAGAAGGGTCTGGTGATCCGAAGT 717
Query 780 TGATGGCTCGGGTTCAAGAGCTATTGAGTGAGCTAAAGCCACAGGAAGAAGAAGCAGCGG 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGATGGTTCGGGTTCAAGAGCTATTGAGTGAGCTAAAGCCACAGGAAGAAGAAGCAGCGG 777
Query 840 CTT---CTG-T--GTCTGTGGAATGTGAAGTTGGTATAGATGAGATAGCGGTTGTCGAAG 893
||| || | |||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 778 CTTTAGCTTCTATGTCTGTTGAATGTGAAGTTGGTATGGATGAGATAGCAGTTGTCGAAG 837
Query 894 GACTTGATGAGTTTGTGAAGGAATGGAGGAGGCCTTATAGGACAAGAAGACTTCCGATTT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 838 GACTTGATGAGTTTGTGAAGGAATGGAGGAGGCCTTATAGGACAAGAAGACTTCCAATTT 897
Query 954 TCGAAGAGATCTTACCACTGAGAGATCAATTGGCTTGTTGATGATTCTCTGTGTGTTTGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCGAAGAGATCTTACCACTGAGAGATCAATTGGCTTGTTGATGATTCTCTGTGTGTTTGG 957
Query 1014 A 1014
|
Sbjct 958 A 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5