BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04778.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910152 jgi|Araly1|910152|Al_scaffold_0001_406 433 4e-121
> Ahg910152 jgi|Araly1|910152|Al_scaffold_0001_406
Length=402
Score = 433 bits (234), Expect = 4e-121
Identities = 268/284 (94%), Gaps = 3/284 (1%)
Strand=Plus/Minus
Query 1 TCAAGGACTACTTGTTCTGACGACATTATTAATATATCCAACACGACAGACGAAGATGGT 60
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 402 TCAAGGACTACTTGTTCTGACGAAATTATTAATAAATCCAACACGAAAGACGAAGATGGT 343
Query 61 CAACTTGGCTTCCGAGGAGGAGGAGGAAGACGGCGGCGACAACATCAACCGCCTAAGAGA 120
|||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 342 CAACTTGGCTCCCGAGGAGGAGGAGGAAGACGGCGCCGACAGCATCAACCGCCTAAGAGA 283
Query 121 CACGGCGGGAGAAGCTGCACTGCCGTCTCCAGCGAGCCTTGCCGTCTCAAAAGCAACCTC 180
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 282 CACGGTGGAAGAAGCTGCACGGCCGTCTCCAGCGAGCCTTGCCGTCTCAAAAGCAACCTC 223
Query 181 AAGATCAAGACGGAGGCCGAGAAAAGCTTTGAACAGAGGAAAGTAAGCTGGCCTGATATT 240
||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 222 AAGATGAGGACAGAGGCCGAGAAAAGCTTGGAACAGAGGAAAGTAAGCTGGCCTGAT--- 166
Query 241 GCTTATGGCAAAGATATTGCTCATGTTCAAGAGTTTGAGCTTAG 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GCTTATGGCAAAGATATTGCTCATGTTCAAGAGTTTGAGCTTAG 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5