BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04780.1
Length=2836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470463 jgi|Araly1|470463|fgenesh2_kg.1__417__AT1G04780.1 3705 0.0
> Ahg470463 jgi|Araly1|470463|fgenesh2_kg.1__417__AT1G04780.1
Length=2325
Score = 3705 bits (2006), Expect = 0.0
Identities = 2225/2331 (95%), Gaps = 14/2331 (1%)
Strand=Plus/Plus
Query 501 TTGTGTTTCCCAGTTGAGAGGGTTTTAGGTTTTAAGATGATGGAACTTGAGTTGTGTTTC 560
||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1 TTGTGTTTCTTAGTTGAGAGGGTTTTAGGTTTCAAGATGATGGAACTTGAGTTGGGTTTC 60
Query 561 TCCTTGTGAAAGATTGAGTCTTTGTAAA--GCTTTTGTTTGTTATATCCAACTTCTGAGA 618
|||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||
Sbjct 61 TCCTTGAGAAAGATTGAGTCTTTATAAAGCGCTTTTGTTTGTTATATCCCACTACTGAGA 120
Query 619 TATGGCAAGCAGCACCATTGATGTTACCAAGTATGGTCACAGTCCTGTTCATCACGCTGT 678
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGGC-A--AGCACCATTGATGTTACCAAGTATGGTCACAGTCCTGTTCATCACGCTGT 177
Query 679 TGTCACAAGGGATTATGCCGGTCTCAAGAAACTATTATCCGCTCTTCCGAAGATGCGTGA 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTCACAAGGGATTATGCCGGTCTCAAGAAACTATTATCCGCTCTTCCGAAGATGCGTGA 237
Query 739 CCCGTCTGAGGTTCAAAACGAAGCAGCTTCTGTAGCTGAAGAGACAAAAGCGGATTCAAT 798
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 238 CCCGTCTGAGGTTAAAAACGAAGCAGCTTCTGTAGCCGAAGAGACCAAAGCGGATTCAAT 297
Query 799 CGCAGCTGTTATAGACAGGCGTGATGTGGTTAATCGAGACACGGCACTTCATTTAGCTGT 858
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 298 TGCAGCTGTTATAGACAGGCGTGATGTAGTTAACCGAGACACGGCTCTTCATTTGGCTGT 357
Query 859 AAAGCTCGGTGATGAGACCTCCGCGGAGATGCTTATGGCTGCTGGTGCTGATTGGAGCTT 918
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 358 AAAGCTCGGTGATGAGACCTCCGCGGAGATGCTTATGGCTGCAGGAGCTGATTGGAGCTT 417
Query 919 GCAGAATGAGCATGGATGGAGCGCTCTACAAGAAGCTATTTGTGGTAGAGAAGAGAGGAT 978
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 GCAGAATGAGCATGGATGGAGCGCTCTACAAGAAGCTATTTGTGGTAGAGAAGAGACGAT 477
Query 979 CGCTATGATTATCGTTAGGCATTATCAGCCTCTGGCTTGGGCTAAATGGTGCAGGAGGCT 1038
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 CGCTATGATCATCGTTAGGCATTATCAGCCTTTGGCTTGGGCTAAATGGTGCAGGAGGCT 537
Query 1039 GCCTCGGCTTGTGGCTACGATGCATAGAATGAGAGATTTCTACATGGAGATCACTTTCCA 1098
|||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 GCCTCGGCTTCTTGCTACGATGCATAGAATGAGAGATTTCTATATGGAGATCACTTTCCA 597
Query 1099 TTTCGAGAGTTCTGTTATACCTTTCATTTCTAGAGTGGCGCCTTCGGATACTTATAAGAT 1158
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 598 TTTCGAGAGTTCTGTTATACCTTTCATTTCTAGAGTGGCTCCGTCGGATACTTATAAGAT 657
Query 1159 TTGGAAGAGGGGTGCGAATCTTAGAGCGGATATGACACTGGCTGGGTTTGATGGTTTCAG 1218
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 TTGGAAGAGGGGTGCGAATCTTAGAGCGGATATGACATTGGCTGGGTTTGATGGTTTCAG 717
Query 1219 GATTCAAAGATCGGATCAGACTATACTTTTTCTTGGAGATGGGTCAGAGGATGGTAAAGT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GATTCAAAGATCGGATCAGACTATACTTTTTCTTGGAGATGGGTCAGAGGATGGTAAAGT 777
Query 1279 TCCTTCCGGTTCTCTTCTTATGATATCACATAAGGATAAGGAGATCATGAATGCTCTAGA 1338
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 TCCTTCCGGTTCTCTTCTGATGATATCACATAAGGATAAGGAGATTATGAATGCTCTAGA 837
Query 1339 CGGTGCTGGAGCTGCCGCATCAGAAGAAGAAGTTCGTCAAGAAGTGGCTGCAATGTCCAA 1398
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CGGTGCTGGAGCTGCAGCATCAGAAGAAGAAGTTCGTCAAGAAGTGGCTGCAATGTCCAA 897
Query 1399 AACAAGCATTTTCAGACCCGGGATCGATGTTACTCAGGCTGTTCTCTTCCCGCAATTAAC 1458
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 AACTAGCATTTTCAGACCCGGGATCGATGTTACTCAAGCTGTTCTCTTCCCGCAATTAAC 957
Query 1459 ATGGAGGCGTCAAGAGAAGACAGAAATGGTTGGGCAATGGAAAGCAAAAGTGTATGATAT 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATGGAGGCGTCAAGAGAAGACAGAAATGGTTGGGCAATGGAAAGCAAAAGTGTATGATAT 1017
Query 1519 GCACAATGTAGTTGTTAGCATAAAATCAAGAAGAGTACCGGGTGCAATGACTGATGAGGA 1578
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 GCACAATGTAGTTGTTAGTATAAAATCAAGAAGAGTACCGGGTGCAATGACCGATGAGGA 1077
Query 1579 GCTTTTCTCAAACACTAATCAAGAAAACGACACAGAAAGCGAGGATCTTGGAGATATCTT 1638
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1078 GCTTTTCTCAAACACTAATCAAGAAAACGATACAGAAAGTGAGGATCTTGGAGATATCTT 1137
Query 1639 GACGGAAGACGAGAAGAGGCAGCTGGAGTTAGCACTCAAGTTGGACTCACCGGAAGAATC 1698
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1138 GACGGAAGACGAGAAAAGGCAGTTGGAGTTAGCACTCAAGTTGGATTCACCGGAAGAATC 1197
Query 1699 TTCTAACGGCGAGAGCTCTAGGATTTCTCAAAAGCAGAATAGTTGTTCTTTCGAGGATCG 1758
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTCTAACAGCGAGAGCTCTAGGATTTCTCAAAAGCAGAATAGTTGTTCTTTCGAGGATCG 1257
Query 1759 AGAAATTCCAGTAACGGATGGGAACGGGTATTGCAAACAGGAGAAGAAAGGATGGTTCAG 1818
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1258 AGAGATTCCAGTAACGGATGGAAACGGGTATTGCAAACAGGAAAAGAAAGGATGGTTCAG 1317
Query 1819 TGGTTGGAGGAAACGAGAGGAAGGGCACAGACGAAGTAGTGTTCCTCCAAGAAACTCGCT 1878
||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||
Sbjct 1318 TGGATGGAGGAAACGAGAAGAAGGGCACAAACGAAGTAGTGTTCCGCCAAGAAGTTCACT 1377
Query 1879 TTGTGTTGATGAGAAAGTAAGTGATCTTCTTGGGGACGATGATTCTCCATCTCGTGGAGG 1938
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TAGTGTCGATGAGAAAGTAAGCGATCTTCTTGGGGACGATGATTCTCCATCTCGTGGAGG 1437
Query 1939 AAGACAGATAAAACCGGGAAGACACTCAACGGTTGAGACAGTTGTGAGGAACGAAAACAG 1998
||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1438 AAGACCGATAAAACCAGGAAGACACTCAACGGTTGAGACTGTTGTGAGGGACGAAAAC-C 1496
Query 1999 GGGGCT-AAGAGATTCATCAAAAGCTTCAACATCAGAAGGCAGCGGAAGCAGCAAACGAA 2057
|||| | ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1497 GGGGATCAAGGGATTCATCAAAAGCTTCAACATCAGAAGGCAGTGGAAGTAGCAAGCGAA 1556
Query 2058 AAGAAGGAAACAAAGAGAATGAGTACAAGAAAGGGCTTAGACCAGTTCTTTGGCTTTCTG 2117
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1557 AAGAAGGAAGCAAAGAGAATGAGTACAAGAAAGGGCTTAGACCGGTTCTTTGGCTTTCAG 1616
Query 2118 AGAGGTTCCCATTACAGACAAAAGAACTTCTTCCATTGCTCGATATCCTTGCAAACAAAG 2177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGAGATTCCCATTACAGACAAAAGAACTTCTTCCATTGCTCGATATCCTTGCAAACAAAG 1676
Query 2178 TCAAAGCAATCCGACGCTTGAGAGAGCTTATGACCACGAAACTACCTTCGGGAACATTCC 2237
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TCAAAGCAATTCGGCGTTTGAGAGAGCTTATGACCACGAAACTACCTTCGGGAACATTCC 1736
Query 2238 CAGTCAAGGTTGCTATTCCCGTAATTCCTACAATTAGAGTACTCGTCACATTTACAAAGT 2297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1737 CAGTCAAGGTTGCTATTCCCGTAATTCCTACGATTAGAGTACTCGTCACATTTACCAAGT 1796
Query 2298 TTGAAGAGCTAGAAGCTATCGAAGATGAGTTTGTTACACCGCCATCTAGTCCAACTTCTT 2357
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1797 TTGAAGAGCTAGAAGCTATTGAAGATGAGTTTGTTACACCGCCATCTAGTCCAACTTATT 1856
Query 2358 CGGTGAAGAACAGTCCTAGAGAAGAAACACAGAGCTCATCAAACCCATCCTCCTCATGGT 2417
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1857 CGGTGAAGAACAGTCCTAGAGAAGAAATACAGAGCTTATCAAACTCATCCTCCTCATGGT 1916
Query 2418 TTCAATGGATCAAAACACCAAGCCAACGTCCATCAACAAGCTCGAGCTCTGGAGGGTTTA 2477
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1917 TTCAATGGATCAAAACACCGAGCCAACGTCCATCAACAAGCTCGAGCTCTGCAGGGTTTA 1976
Query 2478 ATATCGGTAAAGCCGAAAACGATCAAGACCCATTTGCAATTCCAAGAGGATACAATTGGA 2537
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 ACATTGGTAAAGCCGAAAACGATCAAGACCCATTTGCAATTCCAAGAGGATACAATTGGA 2036
Query 2538 TCACAGCTgaagagaagaaaaagaaggtccaagagaagaataaagctaagaagGGCAAGT 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TCACAGCTGAAGAGAAGAAAAAGAAGGTCCAAGAGAAGAATAAAGCTAAGAAGGGCAAGT 2096
Query 2598 CATCTCAGAACAGCTGAAGAAAAAGAAAACTCAAGTAAGAAAAGAGCTTGCTCTGTCTCT 2657
|||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct 2097 CATCTCAGAACAGCTGAAGAAAAAGAAAACACAAGTAAGAAAAGATCTTTCTTTGTCTCT 2156
Query 2658 GAGAACATAAAATACTCAAATTAGGAAAAATCTAGCAGATaaaaaa---aaaaaCAAATG 2714
||||||||||| ||||| || ||||||||||||||||||| ||||| ||||||||||
Sbjct 2157 GAGAACATAAA-TACTCGAAGTAGGAAAAATCTAGCAGATTAAAAAGTGAAAAACAAATC 2215
Query 2715 GAACCTTTTTTCCTGGTTCATGTACTAATAAACCAGGG-AAAAACAAATTCAATTAAATA 2773
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2216 AAACCTTTTT-CCTGGTTCTTGTACTAATAAACCAGGGGAAAAACAAATTCAATTAAATA 2274
Query 2774 TAGTGGGGGAAATTGAGG-AATGATGTGGGTTAATGTTGTTGTGACTTTAT 2823
||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2275 TAGCGGGGGAAATTGAGGGAATGATGTGGGTTAATGTTGTTGTGACTTTAT 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107033588450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5