BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04790.1
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470464 jgi|Araly1|470464|fgenesh2_kg.1__418__AT1G04790.1 2887 0.0
> Ahg470464 jgi|Araly1|470464|fgenesh2_kg.1__418__AT1G04790.1
Length=2044
Score = 2887 bits (1563), Expect = 0.0
Identities = 1903/2063 (92%), Gaps = 40/2063 (2%)
Strand=Plus/Plus
Query 1 GATTGTTCGATGCAGTTGCTTCTCATCGAACAACTAGGGTTTCGATTCCCACATTTGAAT 60
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1 GATTGATCGATGCTGTTGCTTCTCATCGAACAACTAGGGTTTCGATTCGCACATTCGAAT 60
Query 61 CAAATTCAATCGGGATGGAGAAT-TCTGATATTGACATGGTAAT---CATACCTGATACT 116
||||||||||| |||||||| || | ||| |||||||||||||| |||||||||||||
Sbjct 61 CAAATTCAATCAGGATGGAGGATAT-TGACATTGACATGGTAATCAGCATACCTGATACT 119
Query 117 CCAGATAGATCGGTAC-ACCATAGAGAGGTTAAGAGAAGGCCACATTCTCCAGTAGCACC 175
||||||||| | |||| | ||| |||||||||||||||||||||| ||||||| | ||||
Sbjct 120 CCAGATAGACCCGTACGA-CATCGAGAGGTTAAGAGAAGGCCACAATCTCCAGAACCACC 178
Query 176 ATTAAGATATCAAAGAGAGGAATACCGTAATCATCATCTTCACGGAAGAGCCAGACCAGT 235
||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 179 ATTAAGATATCAAAGAGAGGAATACCGTAAT--T-ATCTTAACGGAAGAGCCAGACCAGT 235
Query 236 CCCTGAAATTGGGGACAACCGGGAAAGTTCTGATACACGAACTGAGAGTGGACATCGCCC 295
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 236 CCCTGAAATTGGGGACAACCGGGAAAGTTCTGATACACGAACTGAGAATGGACATCGCTC 295
Query 296 TCGTGCTTCTGTAGGCAATGCTTTGTTTAGGAGAACTGTTGTTGAGAAGGATAAAGGGAA 355
| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 296 GCATGCTTCTGGAGGCAATGCTTTGTTTAGGAGAACTGTGGTTGAGCAGGATAAAGGAAA 355
Query 356 ATCCATCTCCACTGATCCATGTGCGCCTCGTGTAGAGAAAAATCCGGTTTTAAATCTGAA 415
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 ATCCATCTCCACTGATCCACGTGCGGCTCGTGTAGAGAAAAATCCGGTTTTAAATCTGAA 415
Query 416 TCAGCGTAACGGACATGTTCATGTTGCTGCATCGAGATACCAACCATCTGAAGATATAAG 475
||| ||| ||||||||| |||||||||||||||||||| | ||||| ||||||||||||
Sbjct 416 TCAACGTGACGGACATGCTCATGTTGCTGCATCGAGATGCTTACCATTTGAAGATATAAG 475
Query 476 AGAGTTGCGCACAAGTAATGGTTGTTCTCCTTTACGAGGTGATCATAACTCCTTTGTGCT 535
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 476 AGAGTTGCGCACAAGTAATGGTTGTTCTCCTTTACGAGTTGATCATAACTCTTTTATGCT 535
Query 536 GCCGGGGAACAGTAATAAAGGTAAAGAAAAAGCAGATTCTGGCTCTGTTCCTCA-TAGAG 594
||| ||||| |||||||| |||||||||||||||||||||||||||||| || | |||||
Sbjct 536 GCCTGGGAATAGTAATAAGGGTAAAGAAAAAGCAGATTCTGGCTCTGTTTCT-ACTAGAG 594
Query 595 AAACAATTGACCTTTCTAGT-G-GC-AAACCACAGAACAGAGGCACTAAAAGATTGGTGA 651
||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 595 AAACAGTTGACCTTTCCAGTGGCGCAAAACCACAGAACAGAGGCACTAAAAGATTGGTGA 654
Query 652 GACATGGCTGCATTTCTCCACATGAAATAGCAGCTAGAGCTAGACAAGCTGCTGATACCA 711
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 655 GACATGGCTGCATTTCTCCACATGGAATAGCTGCTAGAGCTAGACAAGCTGCTGATACCA 714
Query 712 ATTCCTATGACACACTTAGTGTTGAACAGGAACTAGCTTCTGAAACTGCATCTTCGATTG 771
||||| | |||||| |||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 715 ATTCCAAGGACACAGTTAGTGTTGAACTGGAACTAGCTCCTGAAACTGCATCTTTGATTG 774
Query 772 GCATAAGAGAGATTGTTCCTGAAAGTGATATTCACGGAAGAGCTAGAGGCAAAAGACCTG 831
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 GCATAAGAGAGATTGTTTCTGAAAATGATATTCACGGAAGAGCTAGAGGCAAAAGACCTG 834
Query 832 AAATTTCTAGTAGCAGGGTGGCGAGTAGAGATGGCTT-GGAGGGGTGGGTTAGTACGCGT 890
|||||||| |||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 835 AAATTTCTCGTAGCAGGGTGGCGAGTAGAGACGG-TTCAGAGGGGTGGGTTAGTACACGT 893
Query 891 AACC-GAAATTTAAATATGGAACATGAAATGAATCATAGGGATGAGAGTAACACACGCGG 949
|||| |||| ||||||||||| || ||| ||||||| |||||||||||| ||||||||||
Sbjct 894 AACCGGAAA-TTAAATATGGACCAAGAATTGAATCAGAGGGATGAGAGTGACACACGCGG 952
Query 950 AATTTGTAGTTCTGT-TACCAGACTTGATGTGCGTGAAACCGGTGTAGTTGAAAGAGAAA 1008
||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 953 AATTTGTAGCTCTGTCT-CCAGACTTGATGTGCATGAAACCGGTGTAGTTGAAAGAG-AA 1010
Query 1009 G-TAGACAACAGCGACGGCGGAAAAATGGATTTACTACTTCAACGGCTTCAAATGAGCCA 1067
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GCTAGACAACAACGACGGCGGAAAAATGGATTTACTACTTCAACGGCTTCAAATGAGCCA 1070
Query 1068 GAAGTTACTGTTAATAGATCTTCTGGGGAACCATCTAGTTCAAGGCCACCAAGAATCCAG 1127
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GAAGTTACTGTTATTAGATCTTCTGGGGAACCATCTAGTTCAAGGCCACCAAGAATCCAG 1130
Query 1128 AATCATCTAAGACACTGGCATGGCACACAAGTGTTGGAAATTGAAGATTCATCTCCTGAA 1187
|||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AATCATTTAAGACA----C--GGCACACAAGTGTTGGAAATTGAAGATTCATCTCCTGAA 1184
Query 1188 GTAAGGGTCTTCCGGGGTCCCAGACGTGTTGAAAATGATGTATCTGATGTGAATATAAGA 1247
||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1185 GTACGGGTCTTCCGGGGTCCTAGACGTGTTGAAAACAATGTATCTGATGTGAATGTAAGA 1244
Query 1248 CAAATAGAAGCAGATGAGATACTGGCCCGTGAATTACAAGAACAGCTGTACCGAGAAGAG 1307
||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1245 CAAATAGAAGCAGATGAGATATTGGCCCGTGAATTGCAAGAACAGCTGTACCAAGAAGAG 1304
Query 1308 TCGTTGATCAGACACGAGCAGATCGATGAAATCATAGCCAGGTCGATGGAACAAGAAGAG 1367
| |||||||||||| ||||||| ||||||| |||||| |||| | ||||||||||||||
Sbjct 1305 ACCTTGATCAGACACCAGCAGATTGATGAAAACATAGCAAGGTTGCTGGAACAAGAAGAG 1364
Query 1368 AATTCTCTCCGGGCTTCTTCTAGTCG---TGCTTCTACTCGTAT-TACCCGAAGCTCTAA 1423
|||||| | || |||||||||||||| | ||||||||||| | |||||||| ||||||
Sbjct 1365 AATTCTATTCGTGCTTCTTCTAGTCGTTCTTCTTCTACTCGT-TCTACCCGAAACTCTAA 1423
Query 1424 TACCATCGCAGCAAATCC-ACGTGGGAGAAGTCGCCTGGAAGCACGACTGCAACAACATT 1482
|||||| ||||||| || | |||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 TACCATTACAGCAAA-CCGAGGTGGGAGAAGTCGCCTGGAAGCGCGACTGCAACAACATT 1482
Query 1483 CTTCAAGGAGGCGATTCAATCCTCCACAGGCTCGTGCTCCTGTTAGAGCACCAGCACGGG 1542
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1483 CTTCAAGGAGGCGATTGAATCCTCCACAGGCTCGTGCTCCTGTTAGAGCACCAACACGGG 1542
Query 1543 GTCGAGGTTATCGTTTAGGCGGTGCATCTGCTTCACTACGTACAGCTCTGAATTTCAGTT 1602
|||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 1543 GTCGAGGTTATCGTTTAGGCCGTGCATCTGCTTCACTACACACAGCTCTGAATCTCAGTT 1602
Query 1603 TTCCAAT-TGATATGGGCTTAGACTCGAGAATGGATATTCTGGAGGAATTAGAGAATGCT 1661
|||| || |||||||||| |||| |||||||||||| ||||||||| |||||||||||||
Sbjct 1603 TTCC-ATATGATATGGGCATAGAATCGAGAATGGATCTTCTGGAGGGATTAGAGAATGCT 1661
Query 1662 ATTGGACACTCCATTACCAGTAGTAATCTTCTTCATATGGATCGTGACTTTACTGAAGAT 1721
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ATTGGACACTCCATTAACAATAGTAATCTTCTTCATATGGATCGTGACTTTACTGAAGAT 1721
Query 1722 GATTACGAATTGCTGCTAGCTCTTGATGAAAACAACCATCGACATGGCGGTGCTTCTGCT 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1722 GATTACGAATTGCTGCTAGCTCTTGATGAAAACAACCATCGACATGGCGGTGCTTCTACT 1781
Query 1782 AATCGCATTAACAACTTGCCAGAGTCTACAGTTCAAACTGATAATTTTCAAGAAACTTGT 1841
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1782 CATCGCATTAACAATTTGCCAGAGTCTACAGTTCAAAATGATAATTTTCAAGAAACTTGT 1841
Query 1842 GTTATCTGTCTGGAAACTCCGAAGATTGGAGACACCATACGTCATCTTCCTTGTTTGCAC 1901
||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1842 GTTATTTGTCTGGAAACACCGACGATCGGAGACACCATACGTCATCTTCCTTGTTTGCAC 1901
Query 1902 AAATTCCACAAGGATTGCATTGATCCATGGCTAGGACGGAGTAAATCATGTCCGGTTTGC 1961
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AAATTTCACAAAGATTGCATTGATCCATGGCTAGGACGGAGTAAATCATGTCCGGTTTGC 1961
Query 1962 AAATCCTCAGTTACTTGACAAGGTTTTCAAATTCATCGGAGAATTTGA-AAACT-ACCAT 2019
||||||||||||||||||| |||||||||| ||||||| |||| | | ||| | |||||
Sbjct 1962 AAATCCTCAGTTACTTGACCAGGTTTTCAAGCTCATCGGGGAATGTAACAAATTTACCAT 2021
Query 2020 TTTACCCTTCCAAACCGGTCGAT 2042
||||||||||||| ||||| |||
Sbjct 2022 TTTACCCTTCCAAGCCGGTGGAT 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86122043945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5