BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04800.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470465 jgi|Araly1|470465|fgenesh2_kg.1__419__AT1G04800.1 1038 0.0
> Ahg470465 jgi|Araly1|470465|fgenesh2_kg.1__419__AT1G04800.1
Length=820
Score = 1038 bits (562), Expect = 0.0
Identities = 748/835 (90%), Gaps = 23/835 (3%)
Strand=Plus/Plus
Query 1 CAATAGCTTCTAATATTTTAACTACAAACATTTTAAGTTTCCACTAA-CAATGGGTCTAA 59
||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 CAATAGCTTATAATATTTCAACTACAAACATTTTAAGTTTCCACTAATC-ATGGGTCTAA 59
Query 60 TCGCCGGTAAAGTGCGTGTGTTTGTTTTGGTGTTTGCTTTGGTCACAGATTTTACTATGG 119
||||| ||| || | |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 60 TCGCCTGTAGAGCGTGTGTGTTTGTTTTGGTATTTGCTTTGGTCACAAATTTTACTATGG 119
Query 120 GAGAAGCAGAGTTTGGTGATGAGAAGCCCTTGTTTCCTCACCCTCACCCTCATCCTCTCC 179
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 120 GAGAAACAGAGTTTGGTGATGAGAAGCCCTTGTTTTCTCACCCTCACCCTCGTCCTCTCC 179
Query 180 TCCACAAGAAGGGCTTTAAAAAAGAATTCGGCGACTTAGGTGGTGGTGGTGGTATCAGCG 239
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 180 TCCACAAGAAGGGCTTTAAAAAAGGCTTCGGCGACTTA------GGTGGTGGTATCAGCG 233
Query 240 GTGGAGGCGGCTTTGGAGCAGGTGGCGGTTGGATTGGAGGCAGTGTTGGAGGCTTTGGTG 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GAGGAGGCGGCTTTGGAGCAGGTGGCGGTTGGATTGGAGGCAGTGTTGGAGGCTTTGGTG 293
Query 300 GAGGAATAGGCGGTGGATTTGGTGGAGGAGGATTCGGAGGTGGAGCCGGTAAAGGAGTTG 359
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 294 GAGGAATAGGCGGTGGATTTGGTGGAGGAGGATTCGGAGGTGGAGTCGGAAAAGGAGTTG 353
Query 360 ACGGTGG--CTTCGGAAAAGGAGTTGACGGTGGAGCCGGTAAAGGAGTTGACGGTGGAGC 417
| || || || || ||||||||||| ||||||||||| |||||| |||| || |||
Sbjct 354 ATGGCGGAGCT--GGTAAAGGAGTTGATGGTGGAGCCGGAAAAGGATTTGATGGAGGAAT 411
Query 418 CGGGAAAGGATTTGATGGAGGAGTTGGCAAAGGAGTTGACGGTGGAGCCGGAAAAGGATT 477
||| |||||| |||| || |||| || |||||| ||||||| |||||||||||||||||
Sbjct 412 CGGTAAAGGAGTTGACGGTGGAGCCGGAAAAGGATTTGACGGAGGAGCCGGAAAAGGATT 471
Query 478 TGATGGAGGAGTCGGCAAAGGATTTGAGGGAGGAATCGGAAAAGGAATTGAGGGAGGAGT 537
||||||||||| ||| ||||||||||| || ||| ||||||||||| |||| || |||||
Sbjct 472 TGATGGAGGAGCCGGTAAAGGATTTGATGGCGGAGTCGGAAAAGGATTTGATGGCGGAGT 531
Query 538 CGGAAAAGGATTTGACGGTGGAGCAGGTAAAGGAGTTGACGGTGGAGCCATTGGAGGAAT 597
||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 532 CGGTAAAGGATTTGACGGCGGAGCCGGTAAGGGAGTTGACGGTGGAGCCATTGGAGGAAT 591
Query 598 CGGCGGAGGAGCCGGTAAAGAAATTGGTGGAGGAATTGGCGGCGGAGGTCACTGAGAATT 657
|||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 592 CGGCGGTGGAGCCGGTAAAGAAATTGGCGGAGGAATCGGCGGTGGAGGTCACTGAGAATT 651
Query 658 TGTTTAACCGTAATGTGCATTGATGAGGAGCTAAAATCCAATGCATGTCAT-T-TAA--- 712
|||| ||||||||||||||||||| || |||||||||||||||||||| || | |||
Sbjct 652 TGTTAAACCGTAATGTGCATTGATAAGAAGCTAAAATCCAATGCATGTAATCTCTAATTC 711
Query 713 GAAAACTAATTCGTTATATATGTAACAATAACTGAAATGTATGTCGTTTCTCTTTAGTTT 772
| || |||| | | ||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 712 GTTAA--AATT--TAA-ATATGCAATAATAACTGAAATGTATGTCATTTCTCTTTAGTTT 766
Query 773 GTTTTACTCTTTGAATATGATTGTATCTTGCTTCTTCGTGCAAGTAAAGTGAATA 827
||||| ||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 767 GTTTTCCTCTTTGAA-ATGATTGTATCTTGCTTCTTCGTGTAAATAAAGTGAATA 820
Score = 196 bits (106), Expect = 2e-49
Identities = 152/175 (87%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 410 GGTGGAGCCGGGAAAGGATTTGATGGAGGAGTTGGCAAAGGAGTTGACGGTGGAGCCGGA 469
||||||| ||| |||||| ||||||| |||| ||| ||||||||||| ||||||||||||
Sbjct 332 GGTGGAGTCGGAAAAGGAGTTGATGGCGGAGCTGGTAAAGGAGTTGATGGTGGAGCCGGA 391
Query 470 AAAGGATTTGATGGAGGAGTCGGCAAAGGATTTGAGGGAGGAATCGGAAAAGGAATTGAG 529
|||||||||||||||||| |||| |||||| |||| || ||| |||||||||| ||||
Sbjct 392 AAAGGATTTGATGGAGGAATCGGTAAAGGAGTTGACGGTGGAGCCGGAAAAGGATTTGAC 451
Query 530 GGAGGAGTCGGAAAAGGATTTGACGGTGGAGCAGGTAAAGGAGTTGACGGTGGAG 584
||||||| ||||||||||||||| || ||||| ||||||||| |||| || ||||
Sbjct 452 GGAGGAGCCGGAAAAGGATTTGATGGAGGAGCCGGTAAAGGATTTGATGGCGGAG 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5