BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04830.2
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470467 jgi|Araly1|470467|fgenesh2_kg.1__421__AT1G04830.1 2346 0.0
> Ahg470467 jgi|Araly1|470467|fgenesh2_kg.1__421__AT1G04830.1
Length=1543
Score = 2346 bits (1270), Expect = 0.0
Identities = 1375/1425 (96%), Gaps = 9/1425 (1%)
Strand=Plus/Plus
Query 59 ACGAACTTCCATTAATCACCGACTCGCAGAACCTTTCTCTCATTAAATCTTGTGGAAACC 118
|||| |||||||||||||||||||||||||||||||||||| || || | ||||||
Sbjct 1 ACGAGCTTCCATTAATCACCGACTCGCAGAACCTTTCTCTC-TT---TC---TCGAAACC 53
Query 119 TCGGAAATTGAATCTGCGTGAGTTTCAATCGCTTGATCGATCCATCAAACCCTAGAGATG 178
|||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||
Sbjct 54 TCGGAAATTGAATCTGCGCGAGTTTCAATCGATTGATTGATCCATCAAACACTAGAGATG 113
Query 179 GTGAGGAAAAAGGTACCGGAATGGCTTAATAGCACCATGTGGTCTACTCCTCCTCCGCCA 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GTGAGGAAAAAGGTACCGGAATGGCTTAATAGCACCATGTGGTCTACTCCTCCTCCGCCG 173
Query 239 TCTTCTTACGACGATGGTCTCCTCCGTCATTCCCCCGTCACTAAGATGAAGGAAGAGGCA 298
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 174 TCTTCTTACGACGACGGTCTCCTCCGCCATTCCCCCGTCACTAAAATGAAGGAAGAGGCA 233
Query 299 GAATCGATTTCCGTTGCTCCCAGGCTTAATTCTGCTCCTCCGCCTTCTTCCAAC-ACTTC 357
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 234 CAATCGATTTCCGTTGCTCCCAGGCTTAATTCTGCTCCTCCGCCTTCTTCC-ACTGCTTC 292
Query 358 GGTTCCATCGCCGTCGCATAGACCGAGGAACGGTAACAGTATCTCTGGCGGTAGTGGCGA 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 293 GGTTCCATCGCCGTCGCATAGACCGAGGAACGGTAGCAGTATCTCTGGCGGTAGTGGCGA 352
Query 418 ATATGGACATTCCGTTGGTCCTTCCGCCGAAGACTTTTCCCGCCAGGCTCATGTCTCAGC 477
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 353 ATATGGAAACTCCGTTGGTCCTTCCGCCGAAGATTTTTCCCGCCAGGCTCATGTCTCAGC 412
Query 478 GGAGTTGTCGAAGAAGGTGATCAATATGAAGGAATTGAGGAGTCTAGCTTTACAAAGTTT 537
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 413 GGAGTTATCGAAGAAGGTGATCAACATGAAGGAATTGAGGAGTCTAGCTTTACAAAGTTT 472
Query 538 GCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGCTTTTGCTTGGTTACTTGCCACC 597
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 473 GCCGGATTCTCCTGGTATCCGTTCTATTGTCTGGAAGCTTTTGCTTGGTTACTTGCCACC 532
Query 598 TGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAA 592
Query 658 GGATGAGCTTCTGACGAGTCCTTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGGGTT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGATGAGCTTCTGACGAGTCCTTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGGGTT 652
Query 718 CGACAACTATGACTTGAAGAGTGAAAGCCGATGCATGCTTGCCCGATCCAGAATTACTGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 653 TGACAACTATGACTTGAAGAGTGAAAGCCGATGCATGCTTGCCCGATCCAGAATAACTGA 712
Query 778 CGAGGACCATCCTTTAAGCCTAGGGAAGGCGAGTATCTGGAATACATACTTCCAGGATAC 837
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 713 CGAGGACCATCCTTTAAGTCTAGGGAAGGCGAGCATCTGGAATACTTACTTCCAGGATAC 772
Query 838 GGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTT 832
Query 898 CTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGGAATCTATGAAGAATATATTACTTGT 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CTCCGCTGAATCATCGTTTGCGCGTTCTAATCAGGAATCTATGAAGAATATATTACTTGT 892
Query 958 ATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACC 1017
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 ATTTGCGAAGTTAAATCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCTCC 952
Query 1018 TATCTTTTATGTATTCCGTAACGACCCTGATGAAGATAGTTCATCCCATGCTGAAGCAGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TATCTTTTATGTATTCCGTAACGACCCTGATGAAGATAGTTCATCCCATGCTGAAGCAGA 1012
Query 1078 TGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACT 1072
Query 1138 CGACAATAGTGTGGTGGGAATCCGATCTGCAATTACGAGGCTCTCACAACTTGTGAGGAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1073 CGACAATAGTGTGGTGGGAATCCGATCTGCAATTACGAGGCTCTCACAACTTGTGAGAAA 1132
Query 1198 GCATGATGAGGAACTGTGGCGTCATCTAGAGATCACCACGAAAGTAAATCCACAGTTCTA 1257
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1133 GCATGATGAGGAACTGTGGCGTCATCTAGAGATCACCACAAAAGTCAATCCACAGTTTTA 1192
Query 1258 TGCATTTAGGTGGATCACTCTCCTCCTAACACAAGAGTTTAGTTTCTTTGACAGTCTTCA 1317
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 1193 TGCATTTAGGTGGATCACTCTCCTCCTTACTCAAGAGTTTAGTTTCTTTGACTGTCTTCA 1252
Query 1318 CATATGGGATGCACTCTTAAGCGACCCTGAAGGTCCGCTGGAAAGCTTACTGGGGATATG 1377
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TATATGGGATGCACTCTTAAGTGACCCTGAAGGTCCGCTGGAAAGCTTACTGGGGATATG 1312
Query 1378 TTGTGCGATGCTGGTACTGGTGAGGAGGAGGCTAATCGCTGGGGATTTCACGTCGAATAT 1437
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1313 TTGTGCGATGCTGGTACTGGTGAGGAGGAGGCTAATCGCCGGGGATTTCACGTCGAATAT 1372
Query 1438 GAAGTTACTTCAACACTATCCAACTACAAACATCAGTCATCTCTT 1482
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1373 GAAGTTACTTCAACACTATCCAACTACAAACATCAGCCATCTCTT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5