BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04840.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311569 jgi|Araly1|311569|fgenesh1_pm.C_scaffold_1000349 3022 0.0
> Ahg311569 jgi|Araly1|311569|fgenesh1_pm.C_scaffold_1000349
Length=1995
Score = 3022 bits (1636), Expect = 0.0
Identities = 1883/2003 (94%), Gaps = 13/2003 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCGCTTTCTGTTATTTTTAAACCGAAATCTTCTCCCGCTAAAATCTATTTTCCG 60
||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1 ATGAAATCGCTTTATGTTCTTTTTAAACCGAAATCTTCGCCCGCCAAAATATATTTTCCG 60
Query 61 GCCGATCGTCAAGCCTCACCGGACGAGTCTCACTTCATATCTCTGATTCACGCCTGTAAA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 GCCGATCGTCGAGCCTCACCGGACGAGTCTCACTTCATATCTCTGATTCACACCTGCAAA 120
Query 121 GACACCGCAAGTCTCCGCCATGTTCACGCCCAGATCCTCCGTCGCGGCGTCCTCAGTAGC 180
||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GACACCGTAAGCCTCCGCCTTGTTCACGCCCATATCCTCCGTCGCGGCGTCCTCAGTAGC 180
Query 181 CGCGTCGCTGCTCAGCTCGTATCTTGCTCTTCGCTTCTCAAGTCCCCGGATTATAGCCTC 240
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CGCGTCGCTGCTCAGCTGGTATCTTGCTCTTCGCTTCTCAAGTCCCCAGATTATAGCCTC 240
Query 241 TCGATTTTCAGAAATTCTGAAGAGAGGAATCCTTTTGTTTTAAATGCTTTGATCCGTGGT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCGATTTTCAGAAATTCTGAAGAGAGGAATCCTTTTGTTTTCAATGCTTTGATCCGTGGT 300
Query 301 TTGACGGAGAATGCTCGTTTCGAGTCTTCGGTTCGTCATTTCATTCTCATGTTAAGGCTT 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 301 TTGACGGAGAATGCTCGTTTCGAGTGTTCGGTTCGTCATTTCATTCTCATGTTAACGCTT 360
Query 361 GGTGTGAAACCCGATCGGCTAACTTTTCCGTTTGTACTCAAGTCTAATTCTAAATTAGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 361 GGTGTGAAACCCGATCGGCTAACTTTTCCGTTTGTACTCAAGTCTAATTCGATATTAGGG 420
Query 421 TTTAGATGGTTGGGTAGGGCTCTTCATGCCGCGACTTTGAAGAATTTCGTTGACTGTGAC 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTAGATGGTTGGGTAGAGCTCTTCATGCCGCGACTTTGAAGAATTTCGTTGACTGTGAT 480
Query 481 TCCTTCGTCAGGTTATCATTGGTTGATATGTACGCCAAAACCGGACAATTAAAACATGCC 540
|||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 TCCTTCGTCAGGGTATCCTTGGTTGATATGTACGCCAAGACCGGACAATTAAATCATGCC 540
Query 541 TTCCAAGTGTTCGAAGAAAGTCCTGATAGAATCAAAAAGGAGAGTATTTTGATATGGAAT 600
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 541 TTCCAAGTGTTCGAAGAAACTCCTGATAGAATCAAGAAGGAGAGTATTTTGCTATGGAAT 600
Query 601 GTTTTGATTAATGGGTATTGTCGAGCCAAGGATATGCATATGGCTACAACACTTTTTCGA 660
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GTTTTGGTTAATGGGTATTGTCGAGCCAAGGATATGCAAATGGCTACAACACTTTTTCGG 660
Query 661 TCCATGCCTGAGAGAAATTCAGGATCTTGGAGTACTTTGATCAAGGGTTATGTTGATAGC 720
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 661 TCCATGCCTGAGAGAAATTCAGGATCTTGGAGTACTCTGATTAAGGGTTATGTTGATAAC 720
Query 721 GGCGAGTTGAACAGAGCAAAGCAGCTTTTTGAATTAATGCCAGAGAAAAATGTGGTGTCT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCGAGTTGAACAGAGCCAAGCAGCTTTTTGAATTAATGCCAGAGAAAAATGTGGTGTCT 780
Query 781 TGGACAACATTAATTAATGGGTTTTCTCAAACTGGCGACTATGAAACTGCGATTTCTACC 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TGGACAACATTAATTAATGGGTTTTCTCAAACTGGCGACTATGAAACTGCCATTTCTACC 840
Query 841 TATTTCGAGATGCTAGAGAAGGGCTTAAAGCCTAATGAATACACAATTGCTGCTGTGCTC 900
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 841 TATTTTGAGATGCTAGAGAAGGGCTTGAAGCCTAATGAATACACAGTTGCTGCTGTGCTC 900
Query 901 TCTGCATGTTCAAAATCTGGTGCTCTTGGATCAGGAATAAGAATTCATGGTTATATTTTG 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGCATGCTCAAAATCTGGTGCTCTTGGATCAGGAATAAGAATTCATGGTTATATTTTG 960
Query 961 GACAATGGGATTAAGTTGGATAGAGCCATAGGGACAGCTCTCGTAGACATGTATGCAAAA 1020
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||
Sbjct 961 GACAATGGGATTAAGTTGGATAGAGCTATAGGGACATCTCTCTTAGACATGTACGCAAAA 1020
Query 1021 TGTGGGGAACTTGACTGTGCGGCTACTGTGTTCAGTAATATGAACCATAAGGATATTCTT 1080
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTGGGGAAGTCGACTGTGCGGCTACTGTGTTCAGTAATATGAACCATAAGGATATTCTT 1080
Query 1081 TCTTGGACTGCTATGATACAAGGTTGGGCGGTTCATGGACGCTTTCATCAGGCTATCCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCTTGGACTGCTATGATACAAGGTTGGGCGGTTCATGGACGCTTTCATCAGGCTATCCAA 1140
Query 1141 TGTTTTAGACAAATGATGTATTCCGGAGAGAAGCCAGATGAGGTTGTGTTTCTCGCGGTT 1200
||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1141 TGTTTCAGGCAAATGATGTATTCTGGAGAGAAGCCAGATGAGGTTGTGTTTCTTGCGGTT 1200
Query 1201 CTAACTGCATGCTTGAACTCAAGCGAAGTTGACCTGGGACTTAATTTCTTTGATAGCATG 1260
|| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||
Sbjct 1201 CTGACTGCATGCTTGAACTCAGGCGAAGTAGACCTGGGTCTTAATTTCTTCGATAGCATG 1260
Query 1261 AGGCTTGACTATGCAATTGAACCCACGCTGAAACATTATGTGTTAGTCGTTGATCTGCTA 1320
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||
Sbjct 1261 AGGCTTGACTATGCAATTGAGCCCACACTGAAACATTATGTGTTAGTTGTTGATCTGTTA 1320
Query 1321 GGTAGAGCAGGGAAGTTGAACGAAGCACATGAGCTTGTAGAAAATATGCCGATAAATCCT 1380
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1321 GGTAGAGCAGGGAAGTTGGACGAAGCACATGAGCTTGTAGAATATATGCCGATAAATCCT 1380
Query 1381 GATCTTACAACATGGGCTGCACTCTATCGTGCTTGCAAAGCGCACAAGGGTTATAGAAGG 1440
|||||||| ||||||||||||||||||||||||||||| || |||||| || |||| |
Sbjct 1381 GATCTTACTACATGGGCTGCACTCTATCGTGCTTGCAAGGCACACAAGAGTAATAGGA-- 1438
Query 1441 GCTGAAAGTGTGTCACAAAATCTTTTGGAGCTTGATCCAGAGCTTTGTGGTAGTTACATT 1500
|||| | ||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1439 -CTGATATTGTGTTGCAAAATCTTTTGGAACTTGATCCAGAGCTTCGTGGTAGTTACATT 1497
Query 1501 TTCTTAGACAAAACACATGCGTCTAAAGGGAAC-ATTCAAGATGTAGAGAAAAGAAGATT 1559
|||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1498 TTCTTAGACAAAACTCATGCGGCTAAAGGGAAGTAT-CAAGATGTAGAGAAAAGAAGATT 1556
Query 1560 ATCATTGCAGAAGAGAA-TCAAAGAAAGATC-ATTGGGATGGAGTTATATCGAATTGGAC 1617
||| |||||||||| || ||||||||||||| || |||||| ||||| || ||||| |||
Sbjct 1557 ATCGTTGCAGAAGA-AAGTCAAAGAAAGATCCAT-GGGATGTAGTTACATTGAATTAGAC 1614
Query 1618 GGTCAACTGAACAAATTTTCAGCTGGTGATTATTCTCATAAGCTAA-CACAGGAGATTGG 1676
||||||||||||||||| |||||| ||||||| ||||||||| || |||| ||||| |
Sbjct 1615 TGTCAACTGAACAAATTTGCAGCTGATGATTATACTCATAAGC-AAGCACAAGAGATACG 1673
Query 1677 TTTGAAGCTTGATGAGA-TCATATCGCTTGCCATTCAGAAAGGATACAATCCAGGAGCTG 1735
|||||||||||| | || |||||||||| || ||| ||| |||||||| ||| |||||||
Sbjct 1674 TTTGAAGCTTGAGG-GAATCATATCGCTCGCGATTGAGAGAGGATACATTCCGGGAGCTG 1732
Query 1736 ATTGGTCAATTCATGACATTGAAGAAGAAGAGAAGGAAAATGTTACGGGAATCCATAGTG 1795
||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1733 ATTGGTCGATTCATGACATTGAAGAAGAAGAGAAGGAAAGTGTTACGGGAATACATAGTG 1792
Query 1796 AGAAACTGGCTCTTACACTTGGGTTTCTAAGAACTGCTCCTGGGACCACGATAAGGATCA 1855
||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 1793 AGAAACTGGCTCTTACACTTGGGCTTCTAAGGACTGCTCCTGGAACCACGATAAGGATCA 1852
Query 1856 TTAAGAACCTTAGAATCTGCGGAGATTGTCATTCTTTAATGAAATATGTTAGTAAGATCA 1915
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 TTAAAAACCTTAGAATATGCGGAGATTGTCATTCTTTAATGAAATATGTTAGTAAGATCA 1912
Query 1916 GCCAAAGAGATATTCTACTGAGAGATGCAAGACAGTTTCATCATTTCAAAGATGGAAGAT 1975
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1913 GCCAAAGAGGTATCCTACTGAGAGATGCAAGACAGTTTCATCATTTCAAAGATGGAAGCT 1972
Query 1976 GTTCATGTGGTGATTATTGGTGA 1998
|||||||||||||||||||||||
Sbjct 1973 GTTCATGTGGTGATTATTGGTGA 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5