BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04850.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470469 jgi|Araly1|470469|fgenesh2_kg.1__423__AT1G04850.1 2394 0.0
> Ahg470469 jgi|Araly1|470469|fgenesh2_kg.1__423__AT1G04850.1
Length=1526
Score = 2394 bits (1296), Expect = 0.0
Identities = 1464/1541 (95%), Gaps = 27/1541 (2%)
Strand=Plus/Plus
Query 1 ACTGAAAACGATTGAACCGACCCTATGTCTTCCTTCCTCTCTACCCAAGCAACGAACGGA 60
|||| |||||||||||||||||||| ||||||| | ||||| | |||||||||||||||
Sbjct 1 ACTGGAAACGATTGAACCGACCCTACGTCTTCC-T-CTCTC--CACAAGCAACGAACGGA 56
Query 61 CTTCCCCA-TT-A---AAGGGAAAGAAAGACAATCGAGTCTCGAGTCTGTGAAACCAAGT 115
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CTTCCCCATTTAAGGGAAGGGAAAGAAAGACAATCGAGTCTCGAGTCTGTGAAACCAAGT 116
Query 116 CTCGCGAGTGGGAGATTGTAGCCATGGCAGGAGTATCGCTCAAGTGTGGCGATTGTGGGA 175
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CT----A--GAGAGATTGTAGCCATGGCAGGAGTATCGCTCAAGTGTGGCGATTGTGGGA 170
Query 176 CGCTGCTGAAGTCCGTGGAGGAGGCTCAGGAGCACGCTGAGCTCACCTCTCACTCCAATT 235
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 CGCTTCTGAAGTCCGTGGAGGAGGCTCAGGAGCACGCCGAGCTCACCTCTCACTCCAATT 230
Query 236 TCGCCGAGTCCACTGAGGCCGTGCTCAATCTCGTTTGTACTACTTGCACCAAGCCTTGTC 295
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 231 TCGCCGAGTCCACTGAGGCCGTGCTCAATCTCGTTTGTACTACTTGCAGCAAGCCTTGTC 290
Query 296 GCTCAAAAATCGAAAGCGATTTGCACACGAAAAGAACAGGGCATACTGAGTTTGTAGATA 355
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCTCTAAAACCGAAAGCGATTTGCACACGAAAAGAACAGGGCATACTGAGTTTGTAGATA 350
Query 356 AGACATTGGAGACAATCAAACCCATCAGCTTGGAAGCTCCTAAGGTTGCCATGGAGATTG 415
||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 AGACATTGGAGACGGTAAAACCCATCAGCTTGGAAGCTCCTAAGGTTGCTATGGAGATTG 410
Query 416 ATGATAATGCTAGTGGTAGTGGAGAGGCTGCAGAAGAGATGGTTGTTCCAGACGTTGACA 475
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 411 ACGATAATGCTAGTGGTAGTGGAGAGGCTGCTGAAGAGATGGTTGTTCCAGACGTTGACA 470
Query 476 ATAACATTCTCGAGGAACTTGAAGCGATGGGCTTCCCTAAAGCTCGTGCTACCCGAGCAC 535
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 471 ATAAAATTCTCGAGGAACTTGAAGCAATGGGCTTCCCTAAAGCTCGTGCTACCCGAGCAC 530
Query 536 TCCATTACTCTGGTAATGCCAGTCTTGAGGCTGCAGTTAATTGGGTGGTGGAGCATGAGA 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 TCCATTACTCTGGTAATGCCAGTCTCGAGGCTGCAGTTAATTGGGTGGTGGAGCATGAGA 590
Query 596 ATGATCCTGACGTAGATGAAATGCCAAAGGTGCCTTCCAACTCCAATGTTGGGCCTGCCA 655
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 591 ATGATCCTGACGTAGATGAAATGCCAAAGGTGCCTGCCAACTCCAATGTTGGGCCTGCTA 650
Query 656 AACCTGCTCTTACGCCagaagaagtgaagctaaaagcacaagaattaagggaacgtgcac 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 651 AACCTGCTCTTACGCCAGAAGAAGTGAAGCTAAAAGCACAAGAATTAAGGGAACGTGCGC 710
Query 716 ggaagaagaaagaagaggaagaaaaacggatggaacgtgaaagagagaaggagcgaaTTA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GGAAGAAGAAAGAAGAGGAAGAAAAACGGATGGAACGTGAAAGAGAGAAGGAGCGAATTA 770
Query 776 GGATTGGCAAGGAACTCTTAGAAGCAAAGCGGATGGAAGAAGTAAACGAAAGAAAACGTC 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 771 GGATTGGCAAGGAACTCTTAGAAGCAAAGCGGATGGAAGAAGTAAACGAAAGGAAACGTC 830
Query 836 TTATGTTTTTGCGTAAAGCTGAGAAAGAAGAAGAAAAACGGGCTAGGGAAAAGATCCGTC 895
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TAATGTTTTTGCGTAAAGCTGAGAAAGAAGAAGAAAAACGGGCTAGGGAAAAGATCCGTC 890
Query 896 AAAAGCTTGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTCGGATTGCCTCCGGAAGATC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AAAAGCTTGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTCGGATTGCCTCCGGAAGATC 950
Query 956 CTGCAACTGCAGCTGCAAAACCCTCAGTGCCAGTTGTGGAGGAGAAGAAGGTTACATTGC 1015
||||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||
Sbjct 951 CTGCAACTGCAGCTGCAAAACCCTCGGTGCCAGTTGCGGAGGAGAAGAAGATTTCATTGC 1010
Query 1016 CAATTAGACCGGCCACAAAGACTGAACAAATGAGAGAATGCTTGAGGTCCCTTAAGCAAG 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CAATTAGACCGGCCACAAAGACTGAACAAATGAGAGAATGCTTGAGGTCCCTTAAGCAAA 1070
Query 1076 CCCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTCCAGACTCTGCTGACTTACATGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CCCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTCCAGACTCTGCTGACTTACATGG 1130
Query 1136 GAAATGTCGCTAAGAATCCAGATGAGGAAAAATTCCGGAAAATTAGACTCACCAACCAAA 1195
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1131 GAAATGTCGCTAAGAATCCAGATGAAGAAAAATTCCGGAAAATTAGACTGACCAATCAAA 1190
Query 1196 CATTTCAGGAAAGGGTTGGTTCGCTAAGAGGGGGCATAGAGTTCATGGAGCTATGTGGAT 1255
| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 1191 CCTTTCAGGAAAGGGTTGGTTCACTGAGAGGAGGCATAGAGTTCATGGAGCTATGTGGGT 1250
Query 1256 TTGAGAAAATTGAAGGAGGAGAGTTCTTGTTCTTACCTAGAGACAAGATCGATTCAGCCA 1315
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1251 TTGAGAAAATTGAAGGAGGAGAGTTCTTGTTCTTGCCTAGAGACAAGATCGATTCCGCCA 1310
Query 1316 TCATAAACTCAGCTGGAACAGAACTCAACTCCGCCATCAACAACCCTTTCTTTGGAGTTC 1375
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1311 TCATCAACTCAGCTGGAACAGAGCTCAATTCCGCCATCAACAACCCTTTCTTTGGAGTTC 1370
Query 1376 TTTAAATCCATGCCTCTTCTTATGAAACTa-aaaaaaaa--TTCGGATATCT-CTATGAA 1431
|||||||| ||||| | || ||||||||| |||||||| |||||||||| | |||||
Sbjct 1371 TTTAAATCGATGCCA-T-CT-ATGAAACTATAAAAAAAAAATTCGGATATCAAC-ATGAA 1426
Query 1432 TAATACTGGCTAGTGACATTCTTTTTGTTTT-GCTTAAATAAGTGGAAAATTTGGAGAGC 1490
||||||||||||||||||||||||||||||| | |||| |||||| |||||| |||||||
Sbjct 1427 TAATACTGGCTAGTGACATTCTTTTTGTTTTTGTTTAA-TAAGTGAAAAATTCGGAGAGC 1485
Query 1491 AGAACTAAAAGCT-TCCA-TTACTGTTTAATCCGTCTTGTT 1529
||||||||||| | | || |||||||||||||| |||||||
Sbjct 1486 AGAACTAAAAGATATTCAATTACTGTTTAATCCCTCTTGTT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5