BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04860.1
Length=3418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470470 jgi|Araly1|470470|fgenesh2_kg.1__424__AT1G04860.1 2497 0.0
Ahg901090 jgi|Araly1|901090|Al_scaffold_0004_1740 628 6e-179
> Ahg470470 jgi|Araly1|470470|fgenesh2_kg.1__424__AT1G04860.1
Length=3288
Score = 2497 bits (1352), Expect = 0.0
Identities = 1677/1830 (92%), Gaps = 37/1830 (2%)
Strand=Plus/Plus
Query 29 CACTAACCCCTTTGTCTGCCCCTCTTTCGGAGCGATTCTTTTCTCATTCTTTCGTCGGAC 88
||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 1 CACTAGCCCCTTTGTCTGCCCCTCTTTCGGAGCGATT-ATTTCACATTGTTTCGTCGGAC 59
Query 89 TCTCTG--T-CTCCTTTTGACGGCGGCACCAACGACAAAGCAAGCAAGCAGTGATAACAT 145
|||||| | |||||||||||||||||| || |||| | ||||| ||| | ||||||
Sbjct 60 TCTCTGCCTCCTCCTTTTGACGGCGGCA-GAA--ACAACG-AAGCACGCACTAATAACAC 115
Query 146 CTATCTATCTCTCCGTCTAAACCAATTGATTAGGCTAGATCCCAATTCTTCGAGTATCGA 205
|||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 116 CTATCTCTTTCTCCGTCTAAACCATTTGATTAGTCTAGATCCCAATTCTTCGAGTATCGA 175
Query 206 TTCTTCTTCAATCCTTTTTATGTGAATATTCTCCTAAAGCAGCAACCTCTTGGGTTCTTC 265
|||||||||||||||||| |||| ||||| ||||| ||||||||| || ||||||| ||
Sbjct 176 TTCTTCTTCAATCCTTTTCATGTTAATATCCTCCT-AAGCAGCAATCT-TTGGGTTTTTA 233
Query 266 TT-C-TT-CTGGTAACTGATGGGGAAGAAAGCGAAGAAGAAGGCCCGAGCTCCAACAAAG 322
|| | || | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 TTCCATTAC-AGTAACTGATGGGGAAGAAAGCGAAGAAGAAGGCCCGAGCACCAACAAAG 292
Query 323 GAGATTCAGACCATGGAAATTTCCAAGAAGGTCTCAGAAGAGCCGCCTAGTCAAGCCGGG 382
||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 293 GAGATTCAGACCACAGAATTTTCCATGAAGGTCTCTGAAGAGCCGCCTAGTCAAGCCGGA 352
Query 383 GAAATTGCTGAGGGTGACGTTAAAGCAGTTAAGGAGACACAAGCTTGTGTGCATTTCGAT 442
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GAAATAGCTGAGGGTGACGTTAAAGCAGTTAAGGAGACACAAGCTTGTGTGCATTTCGAT 412
Query 443 AAGGCTCTTAATTTGGAGAAGGTGTTGGATAAGATTAAGTCATCCCGGCAGATTAAGTGT 502
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 413 AAGGGTCTTAATTTGGAGAAAGTGTTGGATAAGATTAAGTCTTCCCGGCAGATTAAGTGT 472
Query 503 GCAGAATGCAATGAAGGAGTGTATGGAAAGAGAGGAACTAAAGCAAAGGGCAGTAAAGGG 562
| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 473 GAAGAATGCAAGGAAGGAGTGTATGGAAAGAGAGGAACTAAAGCAAAGGGCAATAAGGGG 532
Query 563 AAGAAGGATTTTTCTTCTTCTGATCCAAAATCTAATAACAAAGCCATTTGGCTATGTTTG 622
|| || ||||||||||| |||| | | | || |||||||||||||||||||||
Sbjct 533 AAAAAAGATTTTTCTTCATCTG-------A--T-A-AA-AAAGCCATTTGGCTATGTTTG 580
Query 623 GAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTACCAAATGGACCTCAGAGCCATGTT 682
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 581 GAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTACCAAATGGAGCTCAAAGTCATGTT 640
Query 683 TTGCGACACAGCAGAGTGACACGTCACCGATTGGTGATTCAATGGGAAAATCCTCAGTTA 742
||| | || | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTGAGGCATACCAGAGTGACGCGTCACCGATTGGTGATTCAATGGGAAAATCCTCAGTTA 700
Query 743 AGATGGTGTTTCCCGTGCCAGTT-GCTTCTCCCTGTTGAAAAAGAAGATAATGGCGAGAA 801
||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||||
Sbjct 701 AGATGGTGTTTCCCGTGCC-GTTCGCTTCTCCCTGTTGAAAAAGATGATAATGGTGAGAA 759
Query 802 GAAAGATGTACTGTCAGAGGTTGTTAAATTGATTAAAGGACGATCTTTGAACAATTTAGC 861
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 760 GAAAGATGTGCTGTCTGAGGTTGTTAAATTTATTAAAGGACGATCTTTGAACAATTTAGC 819
Query 862 TTCATCCGATATCGAAGATCAGTGCTCAGGAAGTGGCAGTATCACTAGTGATATCAAACT 921
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 820 TTCATCTGATATCGAAGATCAGTGCTCAGGAAGTGGCAGTATCACAAGTGATATCAAATT 879
Query 922 AGAA-G-G-TGCTGTGACCAGTGATATAGAAGCAAGAGATGGTTATGTTGTGCGAGGTTT 978
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 880 AGAAGGTGCTGCTGTGACCAGTGATATAGAAGCAAGAGAGGGTTATGTTGTGCGAGGTTT 939
Query 979 AGTTAACCTTGGGAACACATGTTTCTTTAATTCGATAATGCAGAATCTTCTTTCTTTGGA 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AGTTAACCTTGGGAACACATGTTTCTTTAATTCGATAATGCAGAATCTTCTTTCTTTGGA 999
Query 1039 TCGGTTACGCGATCACTTCTTGAAAGAGAATGGGTCTGGGGTCGGTGGGCCTCTTGCGTC 1098
||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||
Sbjct 1000 TCGGTTACGCGATCATTTCTTGAAGGAGAATGGGTCTGGGGCCGGTAGGCCTCTTGCGTC 1059
Query 1099 TTCCCTGAGGAAATTATTCACTGAAACGAAACCAGAGGCAGGCTTGAAGAGTGTGATAAA 1158
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TTCCCTGAGGAAATTATTCGCTGAAACGAAACCAGAGGCAGGCTTGAAGAGTGTGATAAA 1119
Query 1159 TCCTAGAGCCTTTTTTGGGTCTTTCTGTTCTAAGGCACCCCAGTTCCGGGGATATGACCA 1218
|||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1120 TCCTAGAGTATTTTTTGGGTCTTTCTGTTCTAAGGCACCTCAGTTTCGTGGATATGACCA 1179
Query 1219 GCATGATAGCCACGAGTTGCTACGCTGTTTGCTAGATTCGTTGAGCACCGAAGAATCGGC 1278
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1180 GCATGATAGCCACGAGTTGCTACGCTGTTTGCTAGATGCGTTAAGCACCGAAGAATCGGC 1239
Query 1279 CTTGAGAAAGAAGCGTGGTGTTTCTGATAATGATGAGAAATCTACTACTCTCATAGAATC 1338
||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||
Sbjct 1240 TTTGAGAAAGAAGCATGGTGTTTCTGATAATGGTGAGAAATATACTACTCTCGTAGATTC 1299
Query 1339 TGTATTTGGAGGCGAAACGTCGAGCATTGTTAGTTGTATGGAGTGCGGGCATTCCTCAAA 1398
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1300 TGTATTTGGAGGGGAAACGTCGAGCATTGTTCGTTGTATGGAGTGCGGGCATTCCTCCAA 1359
Query 1399 AGTCTATGAACCATTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAA 1458
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 AGTCTATGAGCCATTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAA 1419
Query 1459 AAAACCACAACCTGTTTCTCGAGCaaaaaaaGCTAAGCTTCCACCTAAGAGAGTCCCAAA 1518
||| |||||||||||||||||||||| |||||||||||||||||| || |||||||| ||
Sbjct 1420 AAAGCCACAACCTGTTTCTCGAGCAAGAAAAGCTAAGCTTCCACCAAAAAGAGTCCCTAA 1479
Query 1519 GAATGTGTCAAAAGTAAGTAAGGTTTCAAAAGTTCTCCCAGGTATGGTTCTTTCGGAACT 1578
|||||||||||||||||||||| ||||||| |||| |||| ||| || |||||| |||||
Sbjct 1480 GAATGTGTCAAAAGTAAGTAAGATTTCAAATGTTCACCCAAGTAAGGCTCTTTCAGAACT 1539
Query 1579 GAACTCTTCCGG-AAAATCTATGGCTGTCACAGCTGATTCGGATACATCCTGTTCCAGTT 1637
||| ||| |||| |||| || ||| ||||| ||||||||| || ||||| ||||| ||||
Sbjct 1540 GAATTCT-CCGGGAAAAGCTTTGGTTGTCATAGCTGATTCAGACACATCGTGTTCTAGTT 1598
Query 1638 TAGCACCCCTTGATAATGGTCCGGTTTTAGAAACTCCTTCAGTTCTAACC-CTTGACAAT 1696
| ||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||
Sbjct 1599 TTGCACCCCTTGATAATGGTCCGGTTTTAGAGACTCTTTCAGTTCTAACCGCT-GACAAT 1657
Query 1697 AATCAGGCCTCAGAAAGTGCATCACAAAGTGATACTGGTTTCGATGGCTCCTGGTTGGAT 1756
|| |||||||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1658 AAGCAGGCCTCAGAAAGTGTAACACAAAGTGATACTGGTTTTGATAGCTTCTGGTTGGAT 1717
Query 1757 TTTATCGGACCAGAAACCTCTGGAGATGAGACGAATTTGGATATGCAAGAAGATGGTATT 1816
|||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1718 ATTATTGGACCAGAAAACTCTGGAGATGAGACGTATTTGGATATGCAAGAAGATGGTACT 1777
Query 1817 GATAATGTCAT-TACAGCTGAGGTTAATCA 1845
||||||||| | |||| |||||| | ||||
Sbjct 1778 GATAATGTC-TCTACAACTGAGGGTGATCA 1806
Score = 2172 bits (1176), Expect = 0.0
Identities = 1343/1421 (95%), Gaps = 22/1421 (2%)
Strand=Plus/Plus
Query 1980 ATGTACAAGCTATGCAGTCTGATGAATGCCCAGCTACAAGTGGTATTTCTGCTGAATTCA 2039
|||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||
Sbjct 1845 ATGTACAAGCTATGCAGTCTGATGAAGGCCCAGTTACGAGCGGTATTTCTGCTGAATTCA 1904
Query 2040 GTCAAGCTAGTTGCATTGGTTGTGATCCTGGTATAGGGGAAAGTTCTTCCTCGGTGAATC 2099
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TTCAAGCTAGTTGCATCAGTTGTGATCCTGGTATAGGGGAAAGTTCTTCCTCGGTGAATC 1964
Query 2100 CTTGGGACGAGGAAGAGCTTCCTTTGGTGGTTGCAGATTCGCAAATTTTGTACATGCCAT 2159
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1965 CTTGGGACGAGGAAGAGCTTCCTTTGGTGGTTGCAGATTCGCAAATTCTGTACATGCCAT 2024
Query 2160 ACAAAGAAATATCCTGTAATGATAAATCAGTTG---AAGGTGAGTGTGAAGCTTCATCTT 2216
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2025 ACAACGAAATATCCTGTAATGATAAATCAGTTGCTGAAGGTGAGTTTGAAGCTTCATCTT 2084
Query 2217 CATTTGTTACTGGTGATCATGAACCACAAAACAGTGATTTTGTTGATTTTGGCGGTTTAT 2276
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 CATTTGGTACTGGTGATCATGAACCACAAAACAGTGATTTTGTTGATTTTGGCGGTTTAT 2144
Query 2277 TTGATGAGCCTGAGACTACTGAGGGACCTGTTTTTGGACCTCCTTCCAAGGCTGAAGCCT 2336
|||||||||| |||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct 2145 TTGATGAGCCCGAGACTACCGAAGGACCTGTCTTTGGACCTCCTTCCAAGGCTGAAGCTT 2204
Query 2337 CGGGAGTTGGTTTTATGGCGTTCAGCAGCGAGTCTGATCCTGAAGAAATCGATGATTCGG 2396
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 CGGGAGTTGGTATTATGGCGTTCAGCAGCGAGTCTGATCCTGAAGAAATCGATGATTCGG 2264
Query 2397 ATTTACCGGTGTCTGTAGAGAGGTGTTTGGGTCATTTCACAAAACATGAGATACTGTCAG 2456
||| ||||||||||||||| |||||||||| |||||||||||| | ||||||| |||| |
Sbjct 2265 ATTCACCGGTGTCTGTAGAAAGGTGTTTGGCTCATTTCACAAAGCCTGAGATATTGTCGG 2324
Query 2457 ATGACAATGCTTGGAACTGCGAGAACTGTTCAAAGAACCTGAAACTCCAACGGTTGAGAG 2516
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 ATGACAATGCTTGGCACTGCGAGAACTGTTCAAAGAACCTGAAACTCCAACGGTTGAGAG 2384
Query 2517 AAAAGCGAAAA-TCCAATGAA-GATGAATCGAGATCAAGCAACACCAGCAACGGATGGGT 2574
|||||| |||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2385 AAAAGC-AAAAGTCCAA-GAAAGATGAATTGAGATCAAGCAACACCAGCAACGGATGGGT 2442
Query 2575 GAAAGAAAATGAAGATGAAGGTTTTGGAGAAACCGAAATTTTGGCTGTTAAACAAGATCC 2634
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2443 GAAAGAAAATGAAAATGAAGGTTTTGGAGAAACTGATATTTTGGCTGTTAAACAAGATCC 2502
Query 2635 AAATGATACTAGTTGTGTCAAGGATCATAGCTCTGATGGAAGAAAAGCTGCGAGGAT-TC 2693
|||||||||| ||||||||||||||||||||||| |||||||||||||| || || | ||
Sbjct 2503 AAATGATACTTGTTGTGTCAAGGATCATAGCTCTAATGGAAGAAAAGCTACGGGG-TCTC 2561
Query 2694 ACTCAGCTGATGAAAGTGAATCCAAAGGAACTCAAGATGAAGACGAAGATTCTGAGAAGG 2753
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2562 ACTCAGCTGATGAAAGTGAATCCAAAGGGACTCAAGATGAAGACGAAGATTCTGAGAAAG 2621
Query 2754 TGATTACAGTGAAGAGAGATGCAACTAAAAAAGTACTTATAAACAAAGCCCCACCTGTCC 2813
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2622 TGATCACAGTGAAGAGAGATGCAACTAAAAGAGTACTTATAAACAAAGCCCCACCTGTCC 2681
Query 2814 TAACCATTCATCTAAAACGATTCAGCCAAGATTTGCGTGGTAGGCTAAGTAAATTAAATG 2873
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2682 TAACCATTCATCTAAAGCGATTCAGCCAAGATTTGCGTGGTAGGCTAAGTAAGTTAAATG 2741
Query 2874 GTCATGTTGCTTTCAAAGAGGTCATCGATCTTCGACAATATATGGACTCAAGGTGTAGCG 2933
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2742 GTCATGTTGCTTTCCAAGAGGTCATCGATCTTCGACAATATATGGACACAAGGTGTAGCG 2801
Query 2934 GAGAAGACCCGCCCGTTTACAGACTGGCTGGATTGGTGGAGCATTCAGGGACGATGAGAG 2993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 GAGAAGACCCGCCCGTTTACAGACTGGCTGGATTGGTGGAGCATTCAGGGACGATGAGAG 2861
Query 2994 GAGGTCATTATGTGGCGTATGTTAGAGGAGGTCAGCGGGTTAAAGAGACTGATTCCTCCT 3053
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2862 GAGGTCATTATGTGGCATATGTTAGAGGAGGTCAGCGAGTTAAAGAGACTGATTCCTCCT 2921
Query 3054 CCACTGCGTGGTATAACGTAAGCGATGCATATGTTCGTCAGGTTTCATTGGAAAAGGTTC 3113
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2922 CCACTGTGTGGTATAACGTAAGCGATGCACATGTTCGTCAGGTTTCATTGGAAAAGGTTC 2981
Query 3114 TGCATTCTGAAGCGTATATCTTGTTCTATGAACGGATCTTCTCACAAGAATGAGAAATTA 3173
||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||| |
Sbjct 2982 TGCATTCTGAAGCTTATATCTTGTTCTATGAACGGATCTTCTGACGAGACTGAGAAATGA 3041
Query 3174 TTTTGTTTCCATTA--C-GAAA--GGAAAGAAGAAAACCAGTTTTGATCTTCTTCCTTAC 3228
|||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||
Sbjct 3042 TTTTGTTTCCATTATACTGAAAAAGGAAAGAAGAAAACCAGTTTTGATCTTCTTCCCTAC 3101
Query 3229 AATAGCTTTTGCTGGGAAAGTTTTTGACGATCACATTAGATCAAATACCATTAATTTTGT 3288
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3102 A---GCTTGTGCTGGGAAAGTTTTTGACGATCACATTAGATCAAATACCATTAATTTTGT 3158
Query 3289 TTTTTCTTATTATATTTTGGAGTCATGAAA-TTTCATTATATGTATCATCAGAAACATTT 3347
||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 3159 TTTTTCTTATTGTATTTTGGAGTCATGAAAATTTCATTATATGTATCA---GAAACATGT 3215
Query 3348 CTGAAAGTATTTGAGCCTCTCCAATGAGTTACATTCT-TTT 3387
|||||| |||||||||||||| ||||||||||||||| |||
Sbjct 3216 CTGAAAATATTTGAGCCTCTCAAATGAGTTACATTCTATTT 3256
> Ahg901090 jgi|Araly1|901090|Al_scaffold_0004_1740
Length=3297
Score = 628 bits (340), Expect = 6e-179
Identities = 856/1096 (78%), Gaps = 72/1096 (7%)
Strand=Plus/Plus
Query 426 CTTGTGTGCATTTCGATAAGGCTCTTAATTTGGAGAAGGTGTTGGATAAGATTAAGTCAT 485
||||||| ||||| ||||| | || ||||||| ||| ||||| | |||||||| || |
Sbjct 137 CTTGTGTCCATTTTGATAAATTTGTTGATTTGGATAAGCTGTTGAAAAAGATTAAATCCT 196
Query 486 CCCGGCAGATTAAGTGTGCAGAATGCAATGAAGGAGTGTATG-GAAAGAGAGGAACTAAA 544
| | || || ||||||| ||||||||| ||||||||| | | | |||||||||| ||||
Sbjct 197 CTCAACAAATCAAGTGTGGAGAATGCAAGGAAGGAGTGCACGTG-AAGAGAGGAAGTAAA 255
Query 545 GCAAAG-GGCAGTAAAGGGA-AGA-AGGATTTTTCTTCTTCTGATCCA-AAATCTAATAA 600
|| || |||| |||| | | || |||||||||||||| ||| || | | |||
Sbjct 256 GC-GAGTATTAGTAGCGGGATATACTGG--TTTTCTTCTTCTGA-CCAGAAGTGTGCTAA 311
Query 601 CAAA-GCCATTTGGCTATGTTTGGAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTAC 659
||| || |||||| | |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 312 -AAAGGCTATTTGGGTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTAC 370
Query 660 CAAATGGACCTCAGAGCCATGTTTTGCGACACAGCAGAG-TGACACGTCACCGATTGGTG 718
| | ||| ||||||| |||||| |||| ||| ||| | |||| |||||||| ||||||
Sbjct 371 CGACTGGGGCTCAGAGTCATGTTATGCGGCACTTCAG-GTTGACGCGTCACCGTTTGGTG 429
Query 719 ATTCAATGGGAAAATCCTCAGTTAAGATGGTGTTTCCCGTGCCAGTTGCTTCTCCCTGTT 778
|||||||| ||||||||||||||||||||||||||| | ||||| | ||| ||||| ||
Sbjct 430 ATTCAATGTGAAAATCCTCAGTTAAGATGGTGTTTCTCATGCCAATCACTTGTCCCTTTT 489
Query 779 GAAAAAGAAGATAATGGCGAGAAGAAAGATGTACTGTC-AGAGGTTGTTAAATTGATTAA 837
||||||||||| ||||| |||||||||||| | || | || || || ||||||||||
Sbjct 490 GAAAAAGAAGAGAATGGTGAGAAGAAAGATTTGTTG-CTGGAAGTCGTGAAATTGATTAG 548
Query 838 AGGACGATCTTTGAACA-ATT-T-AGCTTCATCCGATATC-GAAGA-TCAGTGCTCAGGA 892
|| ||||||| |||| || | ||||||| || | | ||| | ||| || ||||||
Sbjct 549 AGAACGATCTCCAAACACGTTCTCCGCTTCATTTGA-AACTGAATATTCA-TGTTCAGGA 606
Query 893 AGTGGCAGTATCACTAGTGATATCAAACTAGAAGGTGCTGTGACCAGTGATATAGAAGCA 952
||||| | ||||||| | | | | | || | | || ||| ||||||||||
Sbjct 607 AGTGGTAATATCACT-G-G---------TGGTA-GT--T-TCACTGGTGGTATAGAAGCA 651
Query 953 AGAGATGGTTATGTTGTGCGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTC- 1011
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGAGATGGTTATGCTGTAAGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCT 711
Query 1012 GATAATGCAGAATCTTCTTTCTTTGGATCGGTTACGCGATCACTTCTTGAAAGA-GAATG 1070
| ||||||||| ||||| |||||||||| ||||| || |||||||||||||| || |
Sbjct 712 G-TAATGCAGAGCCTTCTCTCTTTGGATCAATTACGTGAGCACTTCTTGAAAGATGA-TC 769
Query 1071 GGTCTGGGGTCGGTGGGCCTCTTGCGTCTTCCCTGAGGAAATTATTCACTGAAACGAAAC 1130
|||| | | |||||||| | |||||||||| ||||||||| ||||| | |||
Sbjct 770 TATCTGT--TAGC-GGGCCTCTCGTTTCTTCCCTGAAGAAATTATTTGCTGAATCAAAAT 826
Query 1131 CAGAGGCAGGCTTGA--AG-AGTGTGATAAATCCTAGAGCCTTTTTTGGGTCTTTCTGTT 1187
||||||||||||| || |||| ||||||||| |||||| |||| | ||| ||||||
Sbjct 827 CAGAGGCAGGCTTTTTTAGGAGTGCGATAAATCCAAGAGCCCTTTTCGTTTCTGTCTGTT 886
Query 1188 CTAAGGCACCCCAGTTCCGGGGATATGACCAGCATGATAGCCACGAGTTGCT-ACGCTGT 1246
|| |||| || || || |||||||| | |||||||| || || |||||||| | | |||
Sbjct 887 CTCAGGCTCCTCAATTTAGGGGATATCAGCAGCATGACAGTCATGAGTTGCTTA-GATGT 945
Query 1247 TTGCTAGATTCGT-TGAGCACCGAAGAATCG-GCCTTGAGAAAGAAGCGTGGTGTTTCTG 1304
||| | ||| || |||||| ||||||||| |||| ||| |||||| |||||||||||
Sbjct 946 TTGTTGGATG-GTCTGAGCATTGAAGAATCGAGCCT-GAGGAAGAAGTTTGGTGTTTCTG 1003
Query 1305 ATAATGATGA--G----A-A-ATCT-A--C-TACTCTCATAGAATCTGTATTTGGAGGCG 1352
||| | |||| | | | ||| | | |||||||||||| |||||||||||||| |
Sbjct 1004 ATAGTAATGACAGTTCTACATATCAGAAACCTACTCTCATAGATTCTGTATTTGGAGGTG 1063
Query 1353 AAACGTCGAGCATTGTTAGTTGTATGG-AGTGCGGGCATTCCTCAAAAGTCTATGAACCA 1411
||| ||||||| |||| |||| ||| | |||||||||| ||||||||| ||||||||
Sbjct 1064 AAATTTCGAGCACTGTTTCTTGTTTGGCA-TGCGGGCATTTCTCAAAAGTGTATGAACCC 1122
Query 1412 TTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAAAAAACCAC-AACC 1470
|||||||||||||| ||||| | || | ||||||| ||||||||||| | || ||
Sbjct 1123 TTTTTGGATCTCTCTTTACCTATTCCGTCCAAGAAACTTCCTCCTAAAAAGCAACGAAT- 1181
Query 1471 TGTTTCTC-GAGCaaa 1485
|||||||| | |||||
Sbjct 1182 TGTTTCTCTG-GCAAA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129053230043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5