BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04870.2
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919175 jgi|Araly1|919175|scaffold_100456.1 1881 0.0
> Ahg919175 jgi|Araly1|919175|scaffold_100456.1
Length=1160
Score = 1881 bits (1018), Expect = 0.0
Identities = 1091/1126 (97%), Gaps = 5/1126 (0%)
Strand=Plus/Plus
Query 215 CGGCGGAGGAGGACCGTCGGCTCCAGTTGACAAAGAAGTTGACTACGCTCAGTACTTCTG 274
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 39 CGGCGGAGGAGGACCGTCGGCTCCAGTTGACAAAGAAGTCGACTACGCTCAGTACTTCTG 98
Query 275 TACTTACTCCTTCCTATACCACCAGAAGGATATGCTCTCCGACCGTGTCCGTATGGATGC 334
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TACTTACTCCTTCCTCTACCACCAGAAGGATATGCTCTCCGACCGTGTCCGTATGGATGC 158
Query 335 TTACTTCAACGCCGTCTTCCAGAACAAACATCACTTTGAGGGCAAGACTGTTTTAGACGT 394
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 159 TTACTTCAATGCCGTCTTCCAGAACAAACATCACTTTGAGGGCAAGACTGTCTTAGACGT 218
Query 395 GGGCACCGGGAGTGGAATTCTTGCAATTTGGTCAGCTCAAGCTGGTGCCAGGAAGGTTTA 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GGGCACCGGGAGTGGAATTCTTGCAATTTGGTCAGCTCAAGCTGGTGCCAGGAAGGTTTA 278
Query 455 TGCCGTTGAAGCTACTAAGATGGCTGATCATGCTCGTGCCCTTGTCAAAGCCAATAACCT 514
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TGCCGTTGAAGCTACTAAAATGGCTGATCATGCTCGTGCCCTTGTCAAAGCCAATAACCT 338
Query 515 TGACCATATTGTAGAAGTCATTGAAGGATCTGTCGAGGATATTTCATTGCCTGAGAAAGT 574
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 339 TGACCATATTGTTGAAGTCATTGAAGGGTCTGTCGAGGATATTTCATTACCTGAGAAAGT 398
Query 575 TGATGTAATTATCTCGGAGTGGATGGGATACTTCCTTCTGCGGGAGTCCATGTTTGATTC 634
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TGACGTAATTATCTCGGAGTGGATGGGATACTTCCTTCTGCGGGAGTCCATGTTTGATTC 458
Query 635 TGTGATTAGTGCTCGTGACCGATGGTTAAAGCCAACAGGTGTCATGTACCCTAGTCATGC 694
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 459 TGTGATTAGTGCTCGTGACCGATGGTTAAAGCCGACAGGTGTCATGTACCCTAGTCATGC 518
Query 695 TCGCATGTGGCTTGCACCCATCAAGTCCAATATAGCAGATCGGAAGAGGAATGATTTCGA 754
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 519 TCGCATGTGGCTTGCACCCATCAAATCCAATATGGCAGATCGGAAGAGGAATGATTTCGA 578
Query 755 TGGGGCAATGGCAGACTGGCATAACTTTTCGGATGAGATCAAAAGTTACTATGGGGTTGA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TGGGGCAATGGCAGACTGGCATAACTTTTCGGATGAGATCAAAAGTTACTATGGGGTTGA 638
Query 815 TATGGGAGTTTTAACAAAACCTTTTGCTGAAGAGCAAGAAAAGTATTACATACAGACTGC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 639 TATGGGAGTTTTAACAAAACCTTTTGCTGAAGAGCAAGAAAAGTATTACATACAGACGGC 698
Query 875 TATGTGGAATGACTTGAATCCACAACAAATCATAGGCACTCCC-ACAATTGTCAAGGAGA 933
||||||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||
Sbjct 699 TATGTGGAATGACTTGAATCCACAACAAATCATCGGCAC-CCCTACAATTGTAAAAGAGA 757
Query 934 TGGATTGTTTGACAGCATCTGTCAGTGAAATCGAGGAAGTCAGATCAAATGTAACGTCAG 993
|||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 758 TGGATTGTTTGACAGCCTCCGTCAGTGAAATTGAGGAAGTCAGATCAAATGTATCGTCAG 817
Query 994 TTATCAATATGGAGCATACAAGGCTATGTGGTTTTGGTGGATGGTTCGATGTTCAGTTCT 1053
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TCATCAATGTGGAGCACACAAGGCTATGTGGTTTTGGTGGATGGTTCGATGTTCAGTTCT 877
Query 1054 CGGGGAGAAAAGAAGACCCCGCACAGCAAGAAATCGAGTTGACCACAGCTCCAAGTGAGC 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGGGGAGAAAAGAAGACCCCGCACAGCAAGAAATCGAGTTGACCACAGCTCCAAGTGAGC 937
Query 1114 AGCACTGCACGCACTGGGGACAACAGGTTTTCATTATGTCGAATCCTATAAATGTTGAGG 1173
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 938 AGCACTGCACGCACTGGGGACAACAGGTATTCATTATGTCGAATCCTATAAATGTTGAGG 997
Query 1174 AAGGTGATAATCTGAATCTTGGTTTGTTAATGAGCCGGTCCAAGGAAAATCACCGACTAA 1233
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 998 AAGGTGATAATCTGAATCTTGGTTTGGTAATGAGCCGGTCCAAGGAAAATCACAGACTAA 1057
Query 1234 TGGAGATTGAGCTTAACTGTGAAATAAAAGAAGCATCTGGTAACCCCAAAGAATCTTTCA 1293
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1058 TGGAGATTGAGCTTAAATGTGAAATAAAAGAGGCATCTGGTAACCCCAAAGAATCTTTCA 1117
Query 1294 AGAAGACTTACTTCATAGAGTGATTGATTGATTATAGAGAAGCTTT 1339
||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 1118 AGAAGACTTACTTCATAGAGTGATTGATT--T-ATACAGAAGCTTT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5