BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04880.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470473 jgi|Araly1|470473|fgenesh2_kg.1__427__AT1G04880.1 2379 0.0
> Ahg470473 jgi|Araly1|470473|fgenesh2_kg.1__427__AT1G04880.1
Length=1519
Score = 2379 bits (1288), Expect = 0.0
Identities = 1445/1522 (95%), Gaps = 6/1522 (0%)
Strand=Plus/Plus
Query 41 AGAAACCAAAGCTTTCATTTTTATGAATATTCAAGGGTGAATAGTTAGCAAAGGAATGGC 100
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 AGAAACCAAAGCTTTCATTTTTATGAATATTCAAGGGTAAATGGTTAGCAAAGGAATGGC 60
Query 101 ATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGA 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGA 120
Query 161 AGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGACTTCCTTGGAAAGGCT 220
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGTCTTCCTTGGAAAGGCT 180
Query 221 GCACTCTCTCTTGGGTACTAAATTCATGGTTCCGATCATAGGAGGAAGAGATTTGGACTT 280
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GCACTCTCTCTTGGGTACTAAATTCATGGTTCCAATCATAGGAGGAAGAGATTTGGACTT 240
Query 281 GCACAAGCTTTTCGTTGAGGTAACCTCACGTGGCGGAATCAATAAGATACTTAATGAAAG 340
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 241 GCACAAGCTTTTCGTTGAGGTAACCTCTCGTGGTGGAATCAATAAGATACTTAATGAAAG 300
Query 341 GAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACTGCAACAAACGCATCATA 400
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 301 GAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACGGCAACAAACGCATCGTA 360
Query 401 TGTTCTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAG 460
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTTTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAG 420
Query 461 ATCTAATGGTCAGATTCCTCCAGACTCTATGCAGAGTCC-ATCTGCTAGACCATGCTTTA 519
||| | ||| |||||||||||||||||| | |||| ||| ||||||||||||| || |||
Sbjct 421 ATCCAGTGGCCAGATTCCTCCAGACTCTCTACAGA-TCCCATCTGCTAGACCAGGCCTTA 479
Query 520 TTCAGGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCA 579
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCACGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCA 539
Query 580 AGATCAATACTGCAGAATTCCTCGGAGGATCACTTGCTGGATCAAATGTGGTTGGAGTGA 639
|||||||| ||| ||| |||| ||||||| | ||||||||||||||||| |||||||||
Sbjct 540 AGATCAATTCTGAAGAGTTCCCCGGAGGACCTGTTGCTGGATCAAATGTGATTGGAGTGA 599
Query 640 TCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTA 659
Query 700 AAGGAGTTCTGTATCAGCTTCTTCCTCAGAACACAGTTTCTTATCAAACTCCGCAACAGA 759
|||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 660 AAGGAGTTCTGTTTCAGCTTCTTCCTCAGAACACAGTTGCTCATCAAACTCCGCAACAGA 719
Query 760 GTCATGGTGTCCTCCCGAACACTCTG-AACATTTCTGCCAATCCTCAGGGGGTTGCAGGA 818
||||||||||| |||| |||||| || |||| |||||||||||| ||||||||| |||
Sbjct 720 GTCATGGTGTCGTCCCCAACACT-TGGAACAATTCTGCCAATCCCCAGGGGGTTATGGGA 778
Query 819 GGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATCAAAAGACGTGATCCTGAT 878
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 779 GGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATTAAAAGACGTGATCCTAAT 838
Query 879 CATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGACTT 938
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 CATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGGCTG 898
Query 939 AAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATGATTGGTGAGCTATGGAAC 998
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 AAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATAATTGGTGAGCTATGGAAC 958
Query 999 AAGCTGAATGAAGACGAAAAATTGATTTACCAAGGGAAGGCAATGGAGGACAAAGAGCGA 1058
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 959 AAGCTGAATGAAGATGAAAAATTGGTTTACCAAGGGAAGGCAATAGAGGACAAAGAGCGA 1018
Query 1059 TACAGAACTGAAATGGAAGATTACAGAGAGaaaaaaaaGAATGGACAGCTCATAAGCAAC 1118
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 1019 TACAGAACTGAAATGGAAGATTACAGAGAGAAGCAAAGGACTGGACAGCTCATAAGCAAC 1078
Query 1119 GCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGACCTT 1178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 GCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGATCTT 1138
Query 1179 CCAATTGATGAAGTCGAAGAAGATGACGAAGAAGGTGATTCAAGCGGATCCTCAGGCGAA 1238
||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1139 CCAATAGACGAAGTCGAAGAAGATGAGGAAGAAGGTGATTCAAGTGGTTCCTCAGGCGAA 1198
Query 1239 AGCGAGCCACATGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCTG 1298
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 AGCGAGCCACGTGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCCG 1258
Query 1299 AATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGGTGGCTCCTAAGGAG 1358
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 AATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGATGGCTCCTAAGGAT 1318
Query 1359 AAAAACGGCGATGTTGTGATGGAAACATCTCCATTGAAGAAAGCCGATGAGCCAACTGTG 1418
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1319 AATAACGGCGATGTTGTGATGGAAACATCTCCACTGAAGAAAGCCGATGAGCCGACTGTG 1378
Query 1419 GCGGTGACTGCTGAGCAGAACTGAAGATTCTTCTCTTGTTTCTTACTCCCCGTTGCCAGT 1478
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1379 GCGGTGACTGCTGAGCAGAACTGAAGATTCTTCTCTTATTTCTTATTCGA-GTTGCCAGT 1437
Query 1479 TT-CGTGTTCCATAGGTAAATGTTAGAGAGAGGAAAGGGCTTCAGATACCTTGCTTCTGG 1537
|| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1438 TTTCGTGTTCCATAGGTAAAGGTTAGAGAGAGGATAGGGCTTCAGATACCTTACTTTTGG 1497
Query 1538 CCCAAGATTATGTCtttttggt 1559
| |||||||||| |||||||||
Sbjct 1498 CACAAGATTATGCCTTTTTGGT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5