BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04890.1
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470474 jgi|Araly1|470474|fgenesh2_kg.1__428__AT1G04890.1 2340 0.0
> Ahg470474 jgi|Araly1|470474|fgenesh2_kg.1__428__AT1G04890.1
Length=1829
Score = 2340 bits (1267), Expect = 0.0
Identities = 1695/1887 (90%), Gaps = 87/1887 (5%)
Strand=Plus/Plus
Query 1 CAAGAGACGAACCAAATGTGATTAACAATAAGGAACTTGGTAGATTTGATCTTATGACCG 60
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1 CAAGAGAAGAACCAAATGTGATTAACAACAAGGAACTTGGTAGATTTGATCTGATGACCG 60
Query 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACAAGAAGATCAAGAAACGGTCTTAAAAACC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACACGAAGATCAAGAAACGGTCTTAAAAACC 120
Query 121 ATAGGAGATCAGGTCGTGTAAACTGTGCAAGTCTCAGATCTATTTCTTCATCAGAAGCCT 180
||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 121 ATAGGAG---AGGTCGTGTAAATTGTGCAAGTCTTAGATCGATTTCTTCATCAGAAGCCT 177
Query 181 TTGATGAGACCGCAAAAACCAATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTGATGAGACCGCAAAAACCCATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 237
Query 241 ACCAAAAAGATTGTGGT-AAGGCAGGAGAGGGGACTAATCTATCTCATTGGCCGGAATTT 299
|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 ACCAAAAAGATTGT-GTAAAGGCAGGAGAGGGGACTAATCTATCTCTTTGGCCGGAATTT 296
Query 300 GAGAAAACCGTATCAGTTAATCAACAGGTAAACTCCAATTCATCAGCAGAACAATCTTTT 359
|||||||| |||||||||||| |||||||||| ||||||||||||||||| || ||||||
Sbjct 297 GAGAAAACTGTATCAGTTAATGAACAGGTAAAGTCCAATTCATCAGCAGATCAGTCTTTT 356
Query 360 GTGAGAAATGTAGA-GAAAAGATCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGAG 418
|| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 357 GTCAGAAATGCAGAGGAAAA-CTCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGCG 415
Query 419 AGCGGCTCGAGCAACGGTTTGTGTCGAGCTTGACAAAGAGAGAAGCGCTGCAGCATCAGC 478
||| ||||||||| ||||||| || ||||||||||||||||||| |||||||||||| ||
Sbjct 416 AGCTGCTCGAGCAGCGGTTTGCGTTGAGCTTGACAAAGAGAGAAACGCTGCAGCATCCGC 475
Query 479 AGCGGATGAAGCGATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCAATTGAAAT 538
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 AGCGGATGAAGCAATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCTATTGAAAT 535
Query 539 GGAAGCGAGGCAGTTCCAGAGACTGGTTGAAGAGAGATCGACTTTTGATGCTGAAGAGAT 598
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 536 GGAAGCGAGGCAATTCCAGAGAATGGTTGAAGAGAAATCGACTTTTGATGCTGAAGAGAT 595
Query 599 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGAGAAAAACATTTCTTGGAGAAAGA 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 596 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGGGAAAAACATTTCTTGGAGAAAGA 655
Query 659 AGTTGAAGCTTATAGACAACTACTCGAAGAAACAGAGGAATTGGAATGTTCTTTAATAAA 718
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 656 AGTTGAAGCTTATAGACAACTACTCGAGGAAACAGAGGAATTGGAATGTTCTTTAACAAA 715
Query 719 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAA-CAAAGACTGTCAAGAGAGAAGAG 777
|||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||
Sbjct 716 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAATC-AAGATTCTCAAGAGAGAAGAG 774
Query 778 CTTTGCTCGTTCAGGAACTTGATGGAACGGTTCTCGATATGCCTTATAGAGAAGAAGGAA 837
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 775 CTTTGCTCGTTCAAGAACTTGATGGAACGGTTCTTGATATGCCTTATAGAGAAGAAGAAA 834
Query 838 ACAGAGATAAAAACAGAGATCTGTATAAATCAGATTCAGAAGTCGCGTACTCACGTGTGC 897
|||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 835 ACAGAGATAAAAGCAGAGATCTGTATAAATCAGATTCAGAAGTCGCTTATTCACGCGTAC 894
Query 898 GTGATGTTTATATGGTGAAGGACGAAACAGAGAACATTAGTAAGAAGAAGAATCTAGAAG 957
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 895 GTGATGTTTATATGGTGAAGGATGAAACAGATAACATTAGTAAGAAGAAGAACCTAGAAG 954
Query 958 AATCCTCTGTTGGCAAACCTAAAGAATCGTTGGATGAAAACAGTATCATTGTCTCGGGGA 1017
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 955 AATCCTCTGTTAGCAAACCTAAAGAATCGTTGGAGGAAAATAGTATCATTGTCTCGGGGA 1014
Query 1018 TTGCTCGAAAGCTACCTCCCTTATGTCGTCCACGCAAGAAGTCGCTGAGCTCTTCGGGTT 1077
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1015 TTGCTCGAAAGCTTCCTCCATTATGTCGTCCACGCAAGAAGTCTCTGAGCTCTTCAGGTT 1074
Query 1078 CAAGGAGAAAATCGATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAAAATGAAGTGG 1137
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1075 CAAGGAGAAAATCAATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAGAATGAAGTGG 1134
Query 1138 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1194
Query 1198 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAAGCGAAGTTGGACAA 1257
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1195 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAGGCGAAGTTGGAGAA 1254
Query 1258 GATCTTGTTCCATGGATCTTCACTCTTCTTGAAGGCTGAAGCCTTTTAAATTTTATGTAC 1317
|||||| ||||||||| ||||||||||| |||||||||||| ||||||||| ||
Sbjct 1255 GATCTTCTTCCATGGACCTTCACTCTTC-------CTGAAGCCTTTTTAATTTTATGCAC 1307
Query 1318 TTAGACACATACATGTTTGTATGTATAGTATACAGGATTCGATTATCAGTTACGTGTTTA 1377
|||| ||||||||||| || |||| ||||| |||| | | |||| || ||| |
Sbjct 1308 GTAGATACATACATGTT-GT--GTAT-GTATA--GGATAC-AGTATC-----CG-GTT-A 1353
Query 1378 CAGATTTTGAGCCATCTCTATGGAGAAAT-CTTGGATCGCAAGTCA-CCCTTTGGGAATG 1435
| ||| |||||||| || | ||||| | |||||||||||||||| |||||||||| ||
Sbjct 1354 C---TTTCGAGCCATCCCTGTAGAGAA-TGCTTGGATCGCAAGTCAACCCTTTGGGA-TG 1408
Query 1436 TATTTTTCTATCGTCGATCATACATA--CTTGCTTTTTGTTCGTTTGTATCGACAATAAT 1493
||||| ||| | || ||| | | |||||||||||||||||| |||||||||||||
Sbjct 1409 TATTTCTCT-T-GTTTTTCAAATGTTTGCTTGCTTTTTGTTCGTTTATATCGACAATAAT 1466
Query 1494 TATTCGACATAGTGATTCAAATATATA-TTACTGCAATAAAAGTTGAAGATAACTTATTT 1552
|||||||| |||||| |||||||| || |||||||||||||| ||||||| |||| ||||
Sbjct 1467 TATTCGACTTAGTGAATCAAATAT-TAATTACTGCAATAAAATTTGAAGAAAACT-ATTT 1524
Query 1553 ACATGTCCTCTTATCAAAT-----CTAAG-A---TACATTGAAAAAGTCATGCAACAACA 1603
||||||| |||| |||||| |||| | ||||||||||||||||||||||||||
Sbjct 1525 ACATGTCTTCTTTTCAAATTAAATCTAATTAAGCTACATTGAAAAAGTCATGCAACAACA 1584
Query 1604 TCCATATATAACGATTGGAAGATATTTT-TG--TGT-T-GTTGATGAAAATAGATTA-TA 1657
|||| ||| |||||||| |||||||||| || | | | |||||||||||||||||| |
Sbjct 1585 TCCAAATAAAACGATTGAAAGATATTTTGTGAATATCTTGTTGATGAAAATAGATTAGTG 1644
Query 1658 TA-TAA-T--GTTCATTTTAGTGTAATATCACTTTGTCTAACAATAATTTAACCTCTCtt 1713
|| || | ||| |||||||||||||||||| | ||||||||||| |||||||||| ||
Sbjct 1645 TAATATCTTTGTTAATTTTAGTGTAATATCACAT-GTCTAACAATATTTTAACCTCT-TT 1702
Query 1714 tttttttAAAC--GAAGCTTTTCAACTGACTGATATAAAATATAACCGTTATTGTAGTAT 1771
||||| ||| ||||||| |||| |||| ||||||||||||||||||||| | ||
Sbjct 1703 TTTTTAAAAAAATGAAGCTTGTCAATTGACCGATATAAAATATAACCGTTAT---A--AT 1757
Query 1772 ATCAGTTGTTCAATGGATTAAATTTTGTTCTAAATGTATGTAAGCGGTGATAATGTATGT 1831
| ||| ||| ||| ||||| || |||||||||| ||||| |||||||||
Sbjct 1758 GG-A-TTG---AATT--TTA--TTTTG----AA-TGTATGTAAGTGGTGAAAATGTATGT 1803
Query 1832 AAAAATGTATTTTACAGATTGTTGAGA 1858
|||| | ||||||||||||||||||||
Sbjct 1804 AAAA-TATATTTTACAGATTGTTGAGA 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76066219265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5