BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04890.1 Length=2023 Score E Sequences producing significant alignments: (Bits) Value Ahg470474 jgi|Araly1|470474|fgenesh2_kg.1__428__AT1G04890.1 2340 0.0 > Ahg470474 jgi|Araly1|470474|fgenesh2_kg.1__428__AT1G04890.1 Length=1829 Score = 2340 bits (1267), Expect = 0.0 Identities = 1695/1887 (90%), Gaps = 87/1887 (5%) Strand=Plus/Plus Query 1 CAAGAGACGAACCAAATGTGATTAACAATAAGGAACTTGGTAGATTTGATCTTATGACCG 60 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1 CAAGAGAAGAACCAAATGTGATTAACAACAAGGAACTTGGTAGATTTGATCTGATGACCG 60 Query 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACAAGAAGATCAAGAAACGGTCTTAAAAACC 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACACGAAGATCAAGAAACGGTCTTAAAAACC 120 Query 121 ATAGGAGATCAGGTCGTGTAAACTGTGCAAGTCTCAGATCTATTTCTTCATCAGAAGCCT 180 ||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 121 ATAGGAG---AGGTCGTGTAAATTGTGCAAGTCTTAGATCGATTTCTTCATCAGAAGCCT 177 Query 181 TTGATGAGACCGCAAAAACCAATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 178 TTGATGAGACCGCAAAAACCCATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 237 Query 241 ACCAAAAAGATTGTGGT-AAGGCAGGAGAGGGGACTAATCTATCTCATTGGCCGGAATTT 299 |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 238 ACCAAAAAGATTGT-GTAAAGGCAGGAGAGGGGACTAATCTATCTCTTTGGCCGGAATTT 296 Query 300 GAGAAAACCGTATCAGTTAATCAACAGGTAAACTCCAATTCATCAGCAGAACAATCTTTT 359 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct 297 GAGAAAACTGTATCAGTTAATGAACAGGTAAAGTCCAATTCATCAGCAGATCAGTCTTTT 356 Query 360 GTGAGAAATGTAGA-GAAAAGATCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGAG 418 || ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| | Sbjct 357 GTCAGAAATGCAGAGGAAAA-CTCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGCG 415 Query 419 AGCGGCTCGAGCAACGGTTTGTGTCGAGCTTGACAAAGAGAGAAGCGCTGCAGCATCAGC 478 ||| ||||||||| ||||||| || ||||||||||||||||||| |||||||||||| || Sbjct 416 AGCTGCTCGAGCAGCGGTTTGCGTTGAGCTTGACAAAGAGAGAAACGCTGCAGCATCCGC 475 Query 479 AGCGGATGAAGCGATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCAATTGAAAT 538 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 476 AGCGGATGAAGCAATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCTATTGAAAT 535 Query 539 GGAAGCGAGGCAGTTCCAGAGACTGGTTGAAGAGAGATCGACTTTTGATGCTGAAGAGAT 598 |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 536 GGAAGCGAGGCAATTCCAGAGAATGGTTGAAGAGAAATCGACTTTTGATGCTGAAGAGAT 595 Query 599 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGAGAAAAACATTTCTTGGAGAAAGA 658 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 596 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGGGAAAAACATTTCTTGGAGAAAGA 655 Query 659 AGTTGAAGCTTATAGACAACTACTCGAAGAAACAGAGGAATTGGAATGTTCTTTAATAAA 718 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 656 AGTTGAAGCTTATAGACAACTACTCGAGGAAACAGAGGAATTGGAATGTTCTTTAACAAA 715 Query 719 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAA-CAAAGACTGTCAAGAGAGAAGAG 777 |||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||| Sbjct 716 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAATC-AAGATTCTCAAGAGAGAAGAG 774 Query 778 CTTTGCTCGTTCAGGAACTTGATGGAACGGTTCTCGATATGCCTTATAGAGAAGAAGGAA 837 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || Sbjct 775 CTTTGCTCGTTCAAGAACTTGATGGAACGGTTCTTGATATGCCTTATAGAGAAGAAGAAA 834 Query 838 ACAGAGATAAAAACAGAGATCTGTATAAATCAGATTCAGAAGTCGCGTACTCACGTGTGC 897 |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 835 ACAGAGATAAAAGCAGAGATCTGTATAAATCAGATTCAGAAGTCGCTTATTCACGCGTAC 894 Query 898 GTGATGTTTATATGGTGAAGGACGAAACAGAGAACATTAGTAAGAAGAAGAATCTAGAAG 957 |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 895 GTGATGTTTATATGGTGAAGGATGAAACAGATAACATTAGTAAGAAGAAGAACCTAGAAG 954 Query 958 AATCCTCTGTTGGCAAACCTAAAGAATCGTTGGATGAAAACAGTATCATTGTCTCGGGGA 1017 ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 955 AATCCTCTGTTAGCAAACCTAAAGAATCGTTGGAGGAAAATAGTATCATTGTCTCGGGGA 1014 Query 1018 TTGCTCGAAAGCTACCTCCCTTATGTCGTCCACGCAAGAAGTCGCTGAGCTCTTCGGGTT 1077 ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||| Sbjct 1015 TTGCTCGAAAGCTTCCTCCATTATGTCGTCCACGCAAGAAGTCTCTGAGCTCTTCAGGTT 1074 Query 1078 CAAGGAGAAAATCGATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAAAATGAAGTGG 1137 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1075 CAAGGAGAAAATCAATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAGAATGAAGTGG 1134 Query 1138 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1194 Query 1198 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAAGCGAAGTTGGACAA 1257 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1195 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAGGCGAAGTTGGAGAA 1254 Query 1258 GATCTTGTTCCATGGATCTTCACTCTTCTTGAAGGCTGAAGCCTTTTAAATTTTATGTAC 1317 |||||| ||||||||| ||||||||||| |||||||||||| ||||||||| || Sbjct 1255 GATCTTCTTCCATGGACCTTCACTCTTC-------CTGAAGCCTTTTTAATTTTATGCAC 1307 Query 1318 TTAGACACATACATGTTTGTATGTATAGTATACAGGATTCGATTATCAGTTACGTGTTTA 1377 |||| ||||||||||| || |||| ||||| |||| | | |||| || ||| | Sbjct 1308 GTAGATACATACATGTT-GT--GTAT-GTATA--GGATAC-AGTATC-----CG-GTT-A 1353 Query 1378 CAGATTTTGAGCCATCTCTATGGAGAAAT-CTTGGATCGCAAGTCA-CCCTTTGGGAATG 1435 | ||| |||||||| || | ||||| | |||||||||||||||| |||||||||| || Sbjct 1354 C---TTTCGAGCCATCCCTGTAGAGAA-TGCTTGGATCGCAAGTCAACCCTTTGGGA-TG 1408 Query 1436 TATTTTTCTATCGTCGATCATACATA--CTTGCTTTTTGTTCGTTTGTATCGACAATAAT 1493 ||||| ||| | || ||| | | |||||||||||||||||| ||||||||||||| Sbjct 1409 TATTTCTCT-T-GTTTTTCAAATGTTTGCTTGCTTTTTGTTCGTTTATATCGACAATAAT 1466 Query 1494 TATTCGACATAGTGATTCAAATATATA-TTACTGCAATAAAAGTTGAAGATAACTTATTT 1552 |||||||| |||||| |||||||| || |||||||||||||| ||||||| |||| |||| Sbjct 1467 TATTCGACTTAGTGAATCAAATAT-TAATTACTGCAATAAAATTTGAAGAAAACT-ATTT 1524 Query 1553 ACATGTCCTCTTATCAAAT-----CTAAG-A---TACATTGAAAAAGTCATGCAACAACA 1603 ||||||| |||| |||||| |||| | |||||||||||||||||||||||||| Sbjct 1525 ACATGTCTTCTTTTCAAATTAAATCTAATTAAGCTACATTGAAAAAGTCATGCAACAACA 1584 Query 1604 TCCATATATAACGATTGGAAGATATTTT-TG--TGT-T-GTTGATGAAAATAGATTA-TA 1657 |||| ||| |||||||| |||||||||| || | | | |||||||||||||||||| | Sbjct 1585 TCCAAATAAAACGATTGAAAGATATTTTGTGAATATCTTGTTGATGAAAATAGATTAGTG 1644 Query 1658 TA-TAA-T--GTTCATTTTAGTGTAATATCACTTTGTCTAACAATAATTTAACCTCTCtt 1713 || || | ||| |||||||||||||||||| | ||||||||||| |||||||||| || Sbjct 1645 TAATATCTTTGTTAATTTTAGTGTAATATCACAT-GTCTAACAATATTTTAACCTCT-TT 1702 Query 1714 tttttttAAAC--GAAGCTTTTCAACTGACTGATATAAAATATAACCGTTATTGTAGTAT 1771 ||||| ||| ||||||| |||| |||| ||||||||||||||||||||| | || Sbjct 1703 TTTTTAAAAAAATGAAGCTTGTCAATTGACCGATATAAAATATAACCGTTAT---A--AT 1757 Query 1772 ATCAGTTGTTCAATGGATTAAATTTTGTTCTAAATGTATGTAAGCGGTGATAATGTATGT 1831 | ||| ||| ||| ||||| || |||||||||| ||||| ||||||||| Sbjct 1758 GG-A-TTG---AATT--TTA--TTTTG----AA-TGTATGTAAGTGGTGAAAATGTATGT 1803 Query 1832 AAAAATGTATTTTACAGATTGTTGAGA 1858 |||| | |||||||||||||||||||| Sbjct 1804 AAAA-TATATTTTACAGATTGTTGAGA 1829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76066219265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5