BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04900.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470475 jgi|Araly1|470475|fgenesh2_kg.1__429__AT1G04900.1 2276 0.0
> Ahg470475 jgi|Araly1|470475|fgenesh2_kg.1__429__AT1G04900.1
Length=1586
Score = 2276 bits (1232), Expect = 0.0
Identities = 1374/1439 (95%), Gaps = 23/1439 (2%)
Strand=Plus/Plus
Query 112 GAAATGTTGATCAATTCGAGCTGCCATGTCTTGGATCGCTTCGAGCTTTCTTCTCTACTC 171
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 56 GAAATGTTGATCAATTCGAGCTGCCATCTCTTGGATCGCTTCGAGCTTTCTTCTCTACTC 115
Query 172 AGAAGCTCATAGGGGATGAACCAGTTCTCGTTCGAGATTTCATACACACTGCATTATATG 231
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 AGAAGCTCATAGGCGATGAACCAGTTCTCGTTCGAGATTTCATACACACAGCATTATATG 175
Query 232 AT--CCAATACAAGGCTACTTCTCTCAACGGTCAAAATCTGTCGGGGTTTTGGAGAGAAG 289
|| |||| | ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 176 ATCCCCAA-A-AAGGCTACTTCTCTCAACGATCCAAATCTGTCGGGGTTTTGGAGAGAAG 233
Query 290 CATTAAGTTCAACCAGCTTGAAGGGAGGAAAGCATACATGAAACTCTTGGAAAAAGTATA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CATTAAGTTCAACCAGCTTGAAGGGAGGAAAGCATACATGAAACTCTTGGAAAAAGTATA 293
Query 350 CAAGCAGAGTGACATTTCTTGGTTTACTCCAGTGGAGCTTTTCAAGCCTTGGTATGCTCA 409
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 294 CAAGCAGAGTGACATTTCTTGGTTTACTCCTGTGGAGCTGTTCAAGCCTTGGTATGCTCA 353
Query 410 TGGGATTGCAGAAGCTATACTGCGTACCACAAATCTCTCAGTTCCATTAAAGATATACGA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGGGATTGCAGAAGCTATACTGCGTACCACAAATCTCTCAGTTCCATTAAAGATATACGA 413
Query 470 AATTGGTGGTGGATCGGGCACATGTGCCAAGGGTGTATTGGACTATATAATGTTGAATGC 529
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 414 AATTGGTGGTGGATCGGGCACATGTGCGAAGGGTGTATTGGACTATATAATGTTGAATGC 473
Query 530 TCCGGAGAGAATCTACAAGAACATGAGCTACACTTCTATAGAAATCAGTCCCTCACTTGC 589
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 474 TCCGGAGAGAATCTACAATAACATGAGCTACACTTCTATAGAAATCAGTCCTTCACTGGC 533
Query 590 TAAGATTCAGAAGGAAACTGTTGCACAAGTTGGAAGTCATCTATCAAAGTTCCGAGTTGA 649
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TAAGATTCAAAAGGAAACTGTTGCACAAGTTGGAAGTCATCTATCAAAGTTCCGAGTTGA 593
Query 650 GTGTCGTGATGCATCTGACCTAGCTGGATGGAAGAATGTGGAGCAACAACCGTGCTGGGT 709
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 594 GTGTCGTGATGCATCTGACCTATCTGGATGGAAGAATATGGAGCAACAACCGTGCTGGGT 653
Query 710 GATAATGCTTGAGGTGCTAGATAATCTCCCACATGATCTTGTCTATTCCAAAAGTCAACT 769
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 654 GATAATGCTTGAGGTGCTAGATAATCTCCCTCATGATCTTGTCTATTCCAAAAGTCAAGT 713
Query 770 TTCCCCATGGATGGAAGTCTTGGTTGAAAATAAACCAGAGAGCGAAGCACTCTCTGAGCT 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTCCCCATGGATGGAAGTCTTGGTTGAAAATAAACCAGAGAGCGAAGCACTCTCTGAGCT 773
Query 830 ATACAAGCCTTTAGAAGATCCACTGATTAAGCGGTGCATTGAAATTGTTGAACATGAAGA 889
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 774 ATACAAGCCTTTAGAAGATCCACTGATCAAGCGCTGCATTGAAATTGTTGAACATGAAGA 833
Query 890 TGATCCGGTTTCAAAACCAAAAGAAATTTGGTCTAAACTATTTCCCAAACCTAGACGTAG 949
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 TGATCCGGTTTCAAAACCAAAAGAAATCTGGTCTAAACTATTTCCCAAACCTAGACGTAG 893
Query 950 TTGGCTTCCAACAGGTTGTTTGAAACTGCTAGAGGTTTTACATGCAAAGCTGCCAAAGAT 1009
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTGGCTTCCGACAGGTTGTTTGAAACTGCTAGAGGTTTTACATGCAAAGCTGCCAAAGAT 953
Query 1010 GTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCTGATGTGAAAGTTCCTGGTGAAAGAGC 1069
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 954 GTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCCGACGTGAAAGTTCCGGGTGAAAGAGC 1013
Query 1070 CCCATTGGTTTCAACAAAGAAAGATGGATGTAGCTCAGATTACAGTAGTTATCTGGACGC 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCCATTGGTTTCAACAAAGAAAGATGGATGTAGCTCAGATTACAGTAGTTATCTGGACGC 1073
Query 1130 AAAGGGTGATGCTGATATATTTTTCCCAACCGATTTCTGGCTTCTAGAACGAATGGACCA 1189
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1074 AAAGGGTGATGCTGATATATTTTTTCCAACCGATTTCTGGCTTTTAGAACGAATGGACCA 1133
Query 1190 TTATTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCATCGAAAAAAGGAAGGAA 1249
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1134 TTACTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCATCGAAGAAAGGAAGGAA 1193
Query 1250 AAGGCGAACTCTCACTCTTGATACATCAGCGTTCATGGATGAGTTTGGTTTACCTTCAAA 1309
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 AAGGCGAACTCTCACTCTCGATACATCAGCATTCATGGATGAGTTTGGTTTACCTTCAAA 1253
Query 1310 GACGAGAACAAAGGACGGATATAACCCCTTACTTGATGACTTCAAGAACACTAAGTTCTA 1369
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1254 GACGAGAACAAAGGACGGATATAACCCTTTACTTGATGACTTCAAGAACACCAAGTTCTA 1313
Query 1370 TCTTAGTGTCCCAACACACAACACTAAGTAGTAAGCAACAGATATCTTCAGCTCATGGAT 1429
||||||||||||||| |||||||||||||||||||||| |||| || || ||||||||
Sbjct 1314 TCTTAGTGTCCCAACCCACAACACTAAGTAGTAAGCAAAAGAT-TCATC---TCATGGAT 1369
Query 1430 GTCGGAATTTTGCAGAGAAATGAAAGAAAAAGTTTAGAGCTCTGA--Attt-tttt-t-- 1483
||| ||| |||||||||||||||||| |||||||||||||| |||| |||| |
Sbjct 1370 GTCTGAAATTTGCAGAGAAATGAAAGG----GTTTAGAGCTCTGATTATTTCTTTTGTTT 1425
Query 1484 ---AGATGATTTAATAAGTTATAATCAAT-ATTCCATCGCTACAGACACTGAAGATAGG 1538
| ||| ||||||||||| |||||||| |||||||||||| ||||| ||||||||||
Sbjct 1426 TTCAAATGCTTTAATAAGTT-TAATCAATTATTCCATCGCTATAGACATTGAAGATAGG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5