BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04910.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470476 jgi|Araly1|470476|fgenesh2_kg.1__430__AT1G04910.1 3125 0.0
> Ahg470476 jgi|Araly1|470476|fgenesh2_kg.1__430__AT1G04910.1
Length=1898
Score = 3125 bits (1692), Expect = 0.0
Identities = 1833/1901 (96%), Gaps = 9/1901 (0%)
Strand=Plus/Plus
Query 2 AAATCTACATCTCGCCAGTGAGAAAGA--CTCCAAGGAGAGAG--AGCTCATACAGAGTA 57
||||||||||||||||||||||||||| |||||||||||||| | | | |||||| |
Sbjct 1 AAATCTACATCTCGCCAGTGAGAAAGACTCTCCAAGGAGAGAGTTTGTTTACACAGAGAA 60
Query 58 TTAGAAATTCTCAAATCACTAGAGAAGATCTCGTCTTCTTCC-TGATTTTAAACGCGATG 116
||| ||||||| |||||||| ||||| ||||||||||||||| || ||| ||||||||||
Sbjct 61 TTACAAATTCTAAAATCACTGGAGAATATCTCGTCTTCTTCCTTG-TTTCAAACGCGATG 119
Query 117 CGAAGGTTAGGTCACCACCGACTTCATGGGAAGACGGGAGGAGTTGGAACAAAGGGGATG 176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAAGGTTAGGGCACCACCGACTTCATGGGAAGACGGGAGGAGTTGGAACAAAGGGGATG 179
Query 177 GTGGCGAAACTGTCTATCGGAGTCATTGTTCTACTGATCTGTACGCTCTCGCTGCTTTTC 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 GTGGCGAAACTTTCTATCGGAGTCATTGTTCTACTGATCTGTACGCTCTCGCTACTTTTC 239
Query 237 TCGGCTAACATCGGTAGCAATCGCGAACCGACCCGTCCATCTAAGATAAACGTGGAAGAG 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TCGGCTAACATCGGTAGCAATCGCGAGCCGACCCGTCCATCTAAGATAAACGTGGAAGAG 299
Query 297 CTCTGGGAGAGTGCTAAATCTGGTGGTTGGAGACCGTCTTCTGCACCACGATCTGACTGG 356
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCTGGCAGAGTGCTGAATCTGGTGGTTGGAGACCGTCTTCTGCACCACGATCTGACTGG 359
Query 357 CCTCCTCCTACGAAGGAGACAAATGGTTATCTCCGTGTTCGATGTAATGGTGGTTTGAAT 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTCCTCCTACCAAGGAGACAAATGGTTATCTCCGTGTTCGATGTAATGGTGGTTTGAAT 419
Query 417 CAGCAACGTAGTGCGATATGTAATGCAGTACTTGCTGCGCGGATCATGAATGCTACACTT 476
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CAGCAACGTAGTGCGATATGTAATGCAGTACTTGCTGCCCGGATCATGAATGCTACACTT 479
Query 477 GTGTTGCCCGAATTAGATGCAAACTCGTTTTGGCATGATGACAGTGGTTTTCAAGGTATC 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGTTACCCGAATTAGATGCAAACTCGTTTTGGCATGATGACAGTGGTTTTCAAGGTATC 539
Query 537 TATGACGTTGAACATTTTATTGAGACACTGAAGTATGATGTTAAGATTGTGGGAAAGATC 596
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATGACGTGGAACATTTTATTGAGACACTGAAGTATGATGTTAAGATTGTGGGAAAGATC 599
Query 597 CCCGATGTTCACAAAAATGGGAAAACCAAGAAGATAAAAGCTTTTCAGATTCGTCCTCCT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 CCCGATGTTCACAAAAATGGGAAAACCAAGAAGATAAAAGCTTTTCAGATTCGCCCTCCT 659
Query 657 CGAGATGCTCCTATTGAGTGGTACCTGACAACTGCTCTAAAGGCAATGAGGGAACATAGT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAGATGCTCCTATTGAGTGGTACCTGACAACTGCTCTAAAGGCAATGAGGGAACATAGT 719
Query 717 GCTATCTATCTTACCCCTTTTTCACATCGTTTAGCGGAGGAAATTGACAATCCTGAATAT 776
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 GCTATCTATCTTACCCCTTTTTCACATCGTTTGGCGGAGGAAATTGACAATCCTGAATAT 779
Query 777 CAAAGGTTAAGGTGCAGAGTGAACTACCATGCTTTGAGATTCAAGCCACACATCATGAAG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 CAAAGGTTAAGGTGCAGAGTGAACTACCATGCTTTGAGATTCAAGCCACACATCATGCAG 839
Query 837 TTGAGTGAATCTATTGTTGATAAACTCCGGTCACAGGGCCACTTCATGTCGATCCATCTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGAGTGAATCTATTGTTGATAAACTCCGGTCACAGGGCCACTTCATGTCGATCCATCTT 899
Query 897 CGTTTTGAAATGGATATGTTGGCATTTGCGGGGTGCTTTGACATATTTAACCCTGAGGAA 956
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 CGTTTTGAAATGGATATGTTGGCATTTGCCGGGTGCTTTGACATATTTAACCCTGAGGAA 959
Query 957 CAGAAGATACTTAGGAAGTACCGTAAAGAAAATTTTGCAGATAAAAGGCTTATTTACAAC 1016
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 CAGAAGATACTTAGGAAGTACCGTAAAGAAAATTTTGCAGAGAAAAGGCTTATTTACAAC 1019
Query 1017 GAAAGACGGGCTATCGGGAAGTGTCCACTGACCCCTGAGGAGGTAGGTCTTATATTACGA 1076
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAAGACGGGCTATCGGAAAGTGTCCACTGACCCCTGAGGAGGTAGGTCTTATATTACGA 1079
Query 1077 GCAATGAGATTCGACAACTCAACAAGGATATACCTAGCAGCCGGTGAACTTTTTGGCGGG 1136
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 1080 GCAATGAGATTCGACAACTCCACAAGGATATACTTAGCAGCTGGTGAACTTTTTGGCGGG 1139
Query 1137 GAACAGTTCATGAAACCGTTTCGAACATTATTCCCACGGCTTGATAACCATAGCTCGGTA 1196
|||| ||||||||||||||||||||| || || |||| |||||| |||||||||||||||
Sbjct 1140 GAACGGTTCATGAAACCGTTTCGAACCTTGTTTCCACAGCTTGACAACCATAGCTCGGTA 1199
Query 1197 GACCCCTCTGAGGAGCTGTCAGCAACCTCACAGGGATTAATAGGATCAGCTGTGGATTAC 1256
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1200 GACCCCTCTGAGGAGCTGTCAGCAAAGTCACAGGGATTAATAGGATCAGCTGTGGATTAC 1259
Query 1257 ATGGTTTGTCTTCTCTCCGACATTTTTATGCCAACATATGATGGACCGAGCAATTTCGCC 1316
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 ATGGTTTGTCTCCTCTCCGACATTTTTATGCCAACATATGATGGACCAAGCAATTTCGCC 1319
Query 1317 AACAATCTCTTAGGTCATCGCCTTTACTATGGTTTCCGTACCACAATCAGACCAGACAGA 1376
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AACAATCTTTTGGGTCATCGCCTTTACTATGGTTTCCGTACCACAATCAGACCAGACAGA 1379
Query 1377 AAAGCATTAGCTCCAATTTTCATAGCTAGAGAGAAGGGGAAAAGGGCTGGCTTCGAAGAG 1436
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1380 AAAGCATTAGCTCCAATTTTCATAGCTAGAGAGAAGGGGAAAACGGCTGGATTTGAAGAA 1439
Query 1437 GCAGTGAGACGAGTAATGCTGAAAACAAACTTCGGAGGGCCTCACAAGCGTGTATCTCCT 1496
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1440 GCAGTGAGACGAGTAATGCTGAAAACAAACTTTGGAGGGCCTCACAAACGTGTATCTCCT 1499
Query 1497 GAATCGTTTTATACAAATTCATGGCCTGAATGTTTCTGTCAGATGAATCCGAAGAAGTCT 1556
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1500 GAATCATTTTATACAAATTCATGGCCTGAATGTTTCTGTCAGATGAATCCGAAGAAATCT 1559
Query 1557 AGTGATAAATGCCCGCCAAATAATGTTATAGAGATTCTTGACAGCCGGTTAGAGAGTATC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1560 AGTGATAAATGCCCGCCAAATAATGTTATAGAGATTCTTGACAGCCGGTTAGAGAGTGTC 1619
Query 1617 AGAGATCCAGATTCAACTTCTCAGACGAATTCCACGGTCACTGGATTAGAACGGTAAGGA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGAGATCCAGATTCAACTTCTCAGACGAATTCCACGGTCACTGGATTAGAACGGTAAGGA 1679
Query 1677 TCTTAACTGGTAAGCCTTTGGAACGTTTTATACCTAAAAGT-GTTTCAAACAAAGAAGAG 1735
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 1680 TCTTAACTGGTAAGCCTTTGGAACGTTTTATACC-AAAACTTGTTTCAAACAAAGAAGAG 1738
Query 1736 CAGAAGAAGAGAGATGTGTCTCCACCATTGTTCATACAATTCAGGTAGCTCAACGTCTCT 1795
||||||||||||||||| |||| || |||||||||||| ||||||||||||||| |||||
Sbjct 1739 CAGAAGAAGAGAGATGTTTCTCGAC-ATTGTTCATACAGTTCAGGTAGCTCAACATCTCT 1797
Query 1796 GTGTCAAACAATTTTCTTTATGAAGCATAGATTTGAATCTTGTTTCAAAATTTGTAACAA 1855
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GTGTCAAACTTTTTTCTTTATGAAGCATAGATTTGAATCTTGTTTCAAAATTTGTAACAA 1857
Query 1856 AATCTAAGAGAAGTGATGAGATTCCACTAATAGTTGTTTTA 1896
|||||| |||||||||||||||||||||||||||| |||||
Sbjct 1858 AATCTACGAGAAGTGATGAGATTCCACTAATAGTTATTTTA 1898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5