BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04920.1
Length=3469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470477 jgi|Araly1|470477|fgenesh2_kg.1__431__AT1G04920.1 5587 0.0
Ahg489859 jgi|Araly1|489859|fgenesh2_kg.6__2993__AT4G10120.2 176 9e-43
> Ahg470477 jgi|Araly1|470477|fgenesh2_kg.1__431__AT1G04920.1
Length=3460
Score = 5587 bits (3025), Expect = 0.0
Identities = 3325/3470 (96%), Gaps = 20/3470 (1%)
Strand=Plus/Plus
Query 1 AGCTCTCTGTTTCTTTCTTTCACACTAACCCC-AATTCTAGTTTCTTACTCTCC----AA 55
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 1 AGCTCTCTGTTTCTTTCTTTCACACTAACCCCAAATT-TAGTTTCTTACTCTCCAAGAAA 59
Query 56 GAAACAAAGAGCACCGATCTC-AGTTTTCTCGAGAAACAG-AGGACAAACTCAGAATGGC 113
|||| |||||||||||||||| | |||||||||||||||| |||| |||||||| |||||
Sbjct 60 GAAAGAAAGAGCACCGATCTCTA-TTTTCTCGAGAAACAGAAGGAAAAACTCAGGATGGC 118
Query 114 GGGGAACGAGTGGATAAATGGGTATTTGGAGGCGATTCTTGACAGCCAAGCTCAGGGGAT 173
||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||
Sbjct 119 GGGGAACGAGTGGATAAATGGATATCTGGAGGCTATTCTTGATAGCCAAGCTCAGGGGAT 178
Query 174 TGAAGAAACGCAGCAGAAACCACAAGCTTCTGTGAATCTGAGAGAAGGTGATGGACAATA 233
||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 179 TGAAGAAACACAGCAGAAACCACAAGCTGCTGTGAATCTGAGAGAAGGAGATGGACAATA 238
Query 234 TTTCAATCCGACTAAATACTTCGTTGAGGAAGTTGTGACTGGTGTCGATGAAACCGATCT 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCAATCCGACTAAATACTTCGTTGAGGAAGTTGTGACTGGTGTCGATGAAACCGATCT 298
Query 294 TCACCGGACTTGGCTCAAAGTTGTAGCCACTCGCAATTCTCGTGAACGTAACTCTCGGTT 353
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 299 TCACCGGACTTGGCTCAAAGTCGTAGCCACTCGCAATTCTCGTGAACGTAACTCTCGATT 358
Query 354 GGAGAATATGTGTTGGAGAATCTGGCATCTCACTCGCAAGAAGAAGCAGTTGGAATGGGA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGAGAATATGTGTTGGAGAATCTGGCATCTCACTCGCAAGAAGAAGCAGTTGGAATGGGA 418
Query 414 GGATTCTCAGCGAATAGCGAATAGGAGATTGGAAAGAGAACAGGGAAGAAGAGATGCGAC 473
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 GGATTCTCAGCGAATAGCGAATAGGAGATTGGAAAGAGAACAGGGAAGGAGAGATGCGAC 478
Query 474 AGAGGATTTGTCTGAAGATTTATCAGAAGGAGAGAAAGGTGATGGTCTTGGAGAAATTGT 533
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 GGAGGATTTGTCTGAGGATTTATCAGAAGGAGAGAAAGGAGATGGTCTTGGAGAAATTGT 538
Query 534 TCAACCGGAGACACCTCGAAGACAATTGCAACGCAATTTATCCAATCTCGAAATCTGGTC 593
| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 539 GCCACCGGAGACACCTCGAAAACAACTGCAACGCAATTTATCCAATCTTGAAATCTGGTC 598
Query 594 TGATGATAAGAAGGAGAATCGTCTTTACGTTGTCCTCATCAGTTTGCATGGGTTGGTTCG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGATGATAAGAAGGAGAATCGTCTTTACGTTGTCCTCATCAGTTTGCATGGGTTGGTTCG 658
Query 654 TGGAGAAAACATGGAGCTTGGTAGCGATTCCGATACTGGTGGACAGGTGAAATATGTTGT 713
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 659 TGGAGAAAACATGGAGCTTGGTAGCGATTCGGATACTGGTGGACAAGTCAAATATGTTGT 718
Query 714 GGAGCTAGCTCGAGCTTTAGCGAGAATGCCTGGTGTGTACCGAGTTGATCTGTTTACTCG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGAGCTAGCTCGAGCTTTAGCGAGAATGCCTGGTGTGTACCGAGTTGATCTGTTTACTCG 778
Query 774 CCAGATATGCTCATCAGAAGTTGATTGGAGCTATGCAGAGCCAACGGAGATGCTAACCAC 833
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCAAATATGCTCGTCAGAAGTTGATTGGAGCTATGCAGAGCCAACGGAGATGCTAACCAC 838
Query 834 TGCTGAAGATTGTGATGGCGATGAAACCGGGGAAAGCAGCGGAGCATATATCATTAGGAT 893
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TGCTGAAGATTGTGATGGCAATGAAACCGGGGAAAGCAGCGGAGCTTATATCATTAGGAT 898
Query 894 ACCGTTTGGTCCACGGGATAAGTACTTAA-ACAAAGAGATTCTCTGGCCGTTTGTCCAAG 952
||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||
Sbjct 899 ACCATTTGGTCCACGGGATAAGTACTTAAGA-AAAGAGATTCTCTGGCCGTATGTGCAAG 957
Query 953 AGTTTGTTGATGGAGCTTTAGCTCACATTCTAAACATGTCAAAAGTTTTGGGAGAGCAGA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 AGTTTGTTGATGGAGCTTTAGCTCACATTCTAAACATGTCAAAAGTTTTGGGAGAACAGA 1017
Query 1013 TTGGGAAGGGGAAGCCTGTGTGGCCATATGTGATTCATGGACATTACGCGGATGCAGGGG 1072
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1018 TTGGGAAGGGGAAACCTGTGTGGCCATATGTGATTCACGGGCATTACGCGGATGCAGGGG 1077
Query 1073 ATAGTGCCGCTCTGCTTTCTGGTGCGTTGAACGTTCCTATGGTCCTGACGGGTCATTCTC 1132
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAGCGCTGCTCTGCTTTCTGGTGCGTTGAACGTTCCTATGGTCCTGACGGGTCATTCTC 1137
Query 1133 TAGGAAGAAACAAGCTTGAGCAGCTTTTGAAACAAGGGAGGCAATCAAAGGAGGATATAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TAGGAAGAAACAAGCTTGAGCAGCTTTTGAAACAAGGGAGGCAATCAAAGGAGGATATAA 1197
Query 1193 ATTCCACATATAAGATCAAGAGGAGGATCGAGGCCGAGGAGCTATCTCTGGATGCTGCAG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATTCCACATATAAGATCAAGAGGAGGATCGAGGCCGAGGAGCTATCTCTGGATGCTGCAG 1257
Query 1253 AGCTTGTTATAACAAGCACGAGGCAGGAGATTGATGAACAGTGGGGACTTTATGATGGGT 1312
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 AGCTTGTTATAACAAGCACGAGGCAGGAGATTGATGAACAATGGGGACTTTATGATGGGT 1317
Query 1313 TCGATGTAAAACTCGAGAAAGTCTTGAGAGCTCGTGCTAGACGCGGTGTTAATTGCCACG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TCGATGTAAAACTCGAGAAAGTCTTGAGAGCTCGTGCTAGACGCGGTGTTAATTGCCACG 1377
Query 1373 GAAGGTTCATGCCAAGAATGGCGGTTATTCCTCCGGGGATGGATTTCACAAACGTTGAGG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAAGGTTCATGCCAAGAATGGCGGTTATTCCTCCGGGGATGGATTTCACAAACGTTGAGG 1437
Query 1433 TTCAAGAAGATACACCTGAGGGTGATGGAGATTTAGCTTCCTTAGTAGGAGGAACCGAGG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1438 TTCAAGAAGATACACCTGAGGGTGATGGAGATTTAGCTTCCTTAGTAGGAGTAACCGAGG 1497
Query 1493 GATCTTCTCCTAAAGCGGTTCCAACTATCTGGTCTGAAGTTATGAGGTTTTTTACAAATC 1552
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 GATCTTCTCCTAAAGCGGTTCCAACTATCTGGTCTGATGTTATGAGGTTTTTTACAAATC 1557
Query 1553 CTCACAAACCTATGATCTTGGCATTATCTAGACCAGACCCAAAGAAGAACATAACCACTC 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTCACAAACCTATGATCTTGGCATTATCTAGACCAGACCCAAAGAAGAACATAACCACTC 1617
Query 1613 TTCTGAAAGCCTTTGGCGAATGTCGGCCTCTACGGGAGCTAGCTAATCTCACTTTGATTA 1672
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1618 TTCTGAAAGCCTTTGGCGAATGTCGGCCTCTACGGGAACTAGCTAATCTCACTTTGATTA 1677
Query 1673 TGGGAAATCGAGATGATATAGATGAGTTGTCATCTGGAAACGCTAGCGTTCTTACAACCG 1732
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1678 TGGGAAATCGAGATGATATAGATGAGCTGTCATCTGGAAACGCTAGCGTTCTTACAACCG 1737
Query 1733 TCTTGAAACTCATCGACAAATATGATCTTTACGGGTCTGTCGCATATCCAAAGCATCATA 1792
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TCTTGAAACTCATTGACAAATATGATCTTTACGGGTCTGTCGCATATCCAAAGCATCATA 1797
Query 1793 AACAGTCTGATGTTCCTGATATATACCGACTTGCTGCAAATACAAAGGGTGTTTTCATAA 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AACAGTCTGATGTTCCTGATATATACCGACTTGCTGCAAATACAAAGGGTGTTTTCATAA 1857
Query 1853 ATCCAGCTTTGGTTGAGCCTTTTGGCCTTACACTCATTGAGGCTGCAGCTCACGGACTTC 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATCCAGCTTTGGTTGAGCCTTTTGGCCTTACACTCATTGAGGCTGCAGCTCACGGACTTC 1917
Query 1913 CGATGGTAGCAACAAAGAATGGAGGACCAGTTGATATTCATAGGGCATTGCACAACGGTT 1972
||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||| |
Sbjct 1918 CGATGGTGGCAACAAAGAATGGAGGAACAGTTGATATACATCGGGCATTGCACAACGGGT 1977
Query 1973 TGCTTGTGGATCCACACGATCAAGAAGCGATAGCGAATGCGTTGTTGAAGCTGGTATCTG 2032
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1978 TGCTTGTGGATCCACACGATCAAGACGCGATAGCGAATGCGTTGCTGAAGCTGGTATCTG 2037
Query 2033 AGAAGAATTTATGGCATGAGTGCAGGATTAACGGTTGGAAGAACATTCACCTCTTCTCAT 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGAAGAATTTATGGCATGAGTGCAGGATTAACGGTTGGAAGAACATTCACCTCTTCTCAT 2097
Query 2093 GGCCTGAGCATTGCCGGACTTACCTTACACGTATAGCCGCGTGCCGTATGAGACATCCGC 2152
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2098 GGCCTGAGCATTGCCGTACTTACCTGACACGTATAGCTGCGTGCCGTATGAGACATCCGC 2157
Query 2153 AGTGGCAGACAGATGCGGACGAAGTGGCTGCTCAAGACGATGAATTTTCACTCAACGACT 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 AGTGGCAGACAGATGCGGACGAAGTGGCTGCTCAAGACGATGAATTTTCACTCAACGACT 2217
Query 2213 CTCTTAAAGACGTTCAAGACATGTCTCTGAGACTCTCTATGGATGGAGATAAACCATCGT 2272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 CTCTTAAAGACGTTCAAGACATGTCTCTGAGACTCTCTATGGATGGAGATAAACCATCGT 2277
Query 2273 TGAACGGGTCTCTTGAACCGAATTCTGCTGATCCGGTTAAACAAATCATGAGCCGGATGA 2332
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 TGAACGGATCTCTTGAACCAAATTCTGCTGATCCGGTTAAACAAATCATGAGCCGGATGA 2337
Query 2333 GGACACCTGAAATCAAGAGTAAACCAGAATTACAGGGGAAGAAACAAAGTGATAACTTGG 2392
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2338 GGACACCCGAAATCAAGAGTAAACCAGAATTACAGGGGAAGAAACAAACTGATAACTTGG 2397
Query 2393 GTAGCAAGTATCCGGTTTTGAGGCGACGGGAACGGTTGGTGGTTTTAGCGGTTGATTGCT 2452
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2398 GGAGCAAGTATCCGGTTTTGAGGCGACGAGAACGGTTGGTGGTTTTAGCGGTTGATTGCT 2457
Query 2453 ATGACAATGAGGGAGCTCCGGATGAGAAAGCAATGGTTCCGATGATTCAGAATATCATCA 2512
|| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2458 ATAACAATGAGGGAGCGCCCGATGAGAAAGCTATGGTTCCGATGATTCAGAATATCATCA 2517
Query 2513 AAGCCGTGCGATCGGATCCACAGATGGCTAAAAACTCTGGTTTTGCGATTTCCACTTCTA 2572
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 AAGCCGTGCGATCGGATCCTCAGATGGCTAAAAACTCTGGTTTTGCGATTTCCACTTCTA 2577
Query 2573 TGCCGCTTGATGAATTAACTCGCTTCTTGAAGTCTGCCAAGATTCAGGTGAGTGAGTTCG 2632
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2578 TGCCGCTTGATGAATTAACTCGCTTTTTGAAGTCTGCCAAGATTCAGGTGAGTGAGTTCG 2637
Query 2633 ACACATTAATATGCAGCAGCGGGAGCGAAGTGTATTATCCAGGAGGGGAAGAGGGAAAGC 2692
||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2638 ACACACTAATATGCAGCAGCGGGAGCGAAGTGTATTACCCAGGAGGGGAAGACGGAAAGC 2697
Query 2693 TTCTTCCGGATCCTGACTATTCCTCGCATATCGATTACCGATGGGGCATGGAAGGGCTTA 2752
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2698 TTCTTCCGGATCCTGACTACTCCTCGCATATCGATTACCGATGGGGCATGGAAGGGCTTA 2757
Query 2753 AGAACACGGTGTGGAAACTGATGAACACTACTGCTGTTGGTGGTGAGGCAAGAAACAAGG 2812
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2758 AGAACACGGTGTGGAAACTGATGAACACAACTGCTGTTGGTGGTGAGGCAAGAAACAAGG 2817
Query 2813 GCTCTCCAAGTCTTATTCAAGAGGATCAGGCATCTAGCAATTCCCATTGCGTTGCATATA 2872
||||||||||||||||||||||||||||| |||| |||||||| |||||||| || |||
Sbjct 2818 GCTCTCCAAGTCTTATTCAAGAGGATCAGTCATCGAGCAATTCACATTGCGTCGCGTATT 2877
Query 2873 TGATCAAAGATCGTTCCAAGGTGATGAGAGTAGATGACTTACGTCAGAAGTTACGACTAA 2932
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 2878 TGATCAAAGATCGTTCCAAGGTGATGAGAGTGGATGACTTGCGTCAGAAGTTACGATTAA 2937
Query 2933 GAGGCCTTCGTTGCCATCCAATGTATTGTCGGAATTCAACGAGAATGCAGATCGTTCCTC 2992
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 2938 GAGGCCTTCGTTGCCATCCTATGTATTGTCGAAATTCAACGAGAATGCAGATTGTTCCTC 2997
Query 2993 TTCTTGCTTCTCGATCTCAAGCTCTCAGGTACTTGTTCGTGCGGTGGAGGCTAAATGTGG 3052
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2998 TTCTTGCTTCTCGATCTCAAGCACTCAGGTACTTGTTCGTGCGGTGGAGGCTAAACGTGG 3057
Query 3053 CGAACATGTACGTGGTGGTTGGAGATCGTGGCGATACGGACTATGAGGAATTGATATCCG 3112
| |||||||||||||||||||| || || |||||||| |||||||| |||||||| ||||
Sbjct 3058 CTAACATGTACGTGGTGGTTGGGGACCGCGGCGATACAGACTATGAAGAATTGATCTCCG 3117
Query 3113 GCACACACAAGACTGTTATCGTCAAGGGGCTCGTCACATTGGGTTCTGATGCTCTTCTCC 3172
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3118 GAACACACAAGACTGTGATCGTCAAGGGGCTCGTCACATTGGGTTCTGATGCTCTTCTCC 3177
Query 3173 GGTCAACAGACCTCCGAGACGACATCGTTCCATCAGAGAGTCCTTTTATCGGTTTTCTCA 3232
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3178 GGTCAACAGATCTTCGAGACGACATCGTTCCAGCAGAGAGTCCTTTTATCGGTTTTCTCA 3237
Query 3233 AGGTTGATTCACCGGTTAAGGAGATAACCGACATTTTTAAGCAGCTCTCGAAAGCCACTG 3292
||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |
Sbjct 3238 AGGCTGATTCACCGGTTCAGGAAATAACCGACATTTTTAAGCAGCTCTCCAAAGCCACCG 3297
Query 3293 CTTGATTCCACTAATATCCAATTCTCCCGGTTCAACCATGTAGATTAatttgtttattta 3352
|||||||| |||||||| |||||| || ||||| |||||||||||| ||||||| |||||
Sbjct 3298 CTTGATTCAACTAATATTCAATTCGCC-GGTTCGACCATGTAGATTGATTTGTT-ATTTA 3355
Query 3353 ttttctacttgtt--ttgggacttttaagttttggtattttgGCCGATCGAACATTAGGA 3410
|||||| || || || | || || ||||||||| |||| ||||| || ||||||
Sbjct 3356 TTTTCTT-TT-TTAATTCTAAAGTTAAATTTTTGGTATCTTGGTCGATCAAATTTTAGGA 3413
Query 3411 TTTAACAGGCTTCTATACATAAAATAAAATTTTCAAATAGTGAAGTCGAG 3460
||||||| | || | || |||||||||| || |||| ||||||||||||
Sbjct 3414 TTTAACAAGTTT-TCTA--TAAAATAAAAGTTACAAACAGTGAAGTCGAG 3460
> Ahg489859 jgi|Araly1|489859|fgenesh2_kg.6__2993__AT4G10120.2
Length=3443
Score = 176 bits (95), Expect = 9e-43
Identities = 981/1391 (71%), Gaps = 132/1391 (9%)
Strand=Plus/Plus
Query 616 CTTTACGTTGTCCTCATCAGTTTGCATGGGTTGGTTCGTGGAGAAAACATGGAGCTTGGT 675
||||| ||||||| |||||| ||||||| | || |||||||||||||||||||||||
Sbjct 735 CTTTATATTGTCCTAATCAGTATGCATGGACTCGTGCGTGGAGAAAACATGGAGCTTGGA 794
Query 676 AGCGATTCCGATACTGGTGGACAGGTGAAATATGTTGTGGAGCTAGCTCGAGCTTTAGCG 735
|| || || ||||||||||||||||||||||||||||| ||||| ||||| || || ||
Sbjct 795 AGAGACTCTGATACTGGTGGACAGGTGAAATATGTTGTTGAGCTTGCTCGTGCCTTGGCC 854
Query 736 AGA-A-TGCCTGGTGTGTACCGAGTTGATCTGTTTACTCGCCAGAT-ATGCTCATCAGAA 792
| | | || || || || | || ||||| || || || ||||| | | ||| ||||
Sbjct 855 A-ACACTGAA-GGAGTCCACAGGGTCGATCTCTTAACACGGCAGATCA-GTTCACCAGAG 911
Query 793 GTTGATTGGAGCTATG-CAGAGCCAACGGAGATGCTAACCACTGC--TGAAGATTGTGAT 849
||||| | ||||| | | |||||| |||||| || | | ||| | ||| || |
Sbjct 912 GTTGACTACAGCTACGGC-GAGCCAGTTGAGATGTTATC-A-TGCCCTCCAGAAGGT-A- 966
Query 850 GGCGATGAAACCGGGGAAAGCAGCGGAGCATATATCATTAGGATACCGTTTGGTCCACGG 909
| ||| | | | || | | | ||| ||| | | || || | ||| | |||
Sbjct 967 G-CGAC-AG-CTGTGGCT--C--CT-A-CAT-TAT--TC-GCATCCCCTGCGGTTCTCGG 1013
Query 910 GATAAGTACTTAAACAAAGAGATTC--TCTGGCCGTTTGT-CCAAGAGTTTGTTGATGGA 966
|| |||||| || ||||| || || ||||||| | | || ||||||||||||||
Sbjct 1014 GACAAGTACATAC-CAAAG-GAGTCACTCTGGCCCCATATTCCC-GAGTTTGTTGATGGG 1070
Query 967 GCTTTAGCTCACATTCTAAACAT-GTCAAAAGTTT-TGGGAGAGCA-G--ATTGGGAAGG 1021
|| || |||||| | | ||| | ||| | | | |||||||||| | | ||| | ||
Sbjct 1071 GCGCTAAATCACATAGTGAGCATAG-CAAGA-TCTCTGGGAGAGCAAGTGAATGG-A-GG 1126
Query 1022 GGAAGCCTGTGTGGCCATATGTGATTCATGGACATTACGCGGATGCAGGGGATAGT-GCC 1080
| || || | ||||| ||||| |||||||| || || || |||||||| || ||| ||
Sbjct 1127 GAAA-CCAATCTGGCCTTATGTAATTCATGGCCACTATGCTGATGCAGGAGA-AGTAGCT 1184
Query 1081 GCTCTGCTTT--CTGGTGCGTTGAACGTTCCTATGGTCCTGACGGGTCATTCTCTAGGAA 1138
|| | ||| | || ||||| || || || ||||| || || ||||||||| | ||||
Sbjct 1185 GCACA--TTTGGCAGGAGCGTTAAATGTGCCAATGGTGCTAACTGGTCATTCTTTGGGAA 1242
Query 1139 GAAACAAGCTTGAGCAGCTT--TTGAAACAAGGGAGGCAATCAA-AG-GAGGATATAAAT 1194
| || ||| |||||||| || || || |||||||| ||| | || |||||||| |
Sbjct 1243 GGAATAAGTTTGAGCAG-TTGCTTCAA-CAAGGGAG--AATTACCAGAGAGGATATTGAC 1298
Query 1195 TCCACATATAAGATCAAGAGGAGGATCGAGGCCGAGGAGCT-ATCTCTGGATGCTGCAGA 1253
||||||||||||| ||||||||| || || || || | | | || ||||| || ||
Sbjct 1299 AGAACATATAAGATCATGAGGAGGATAGAAGCTGAAGAACAGAGC-CTTGATGCAGCCGA 1357
Query 1254 GCTTGTTATAACAAGCACGAGG-CAGGAGATTGATGAACAGTGGGGACTTTATGATGGGT 1312
| | || | |||||||| | | || |||||||| | |||||||| || |||||||| |
Sbjct 1358 GATGGTGGTGACAAGCAC-ACGACAAGAGATTGAGGCGCAGTGGGGGCTGTATGATGGTT 1416
Query 1313 TCGATGTAAAACTCGAGA--AAGTCTTGAGAGCTCGTGCTA-GACGCGGTGTTAATTGCC 1369
| ||| | || || |||| ||| || || | | | | | | || || || | ||||
Sbjct 1417 TTGATATCAAGCTGGAGAGGAAG-CTC-AGGGTTAGA-CGACGGCGTGGAGTCAGCTGCC 1473
Query 1370 ACGGAAGGTTCATGCCAAGAATGGCGGTTATTCCTCCGGGGATGGATTTCA-CAAACGT- 1427
|| | | ||||||| |||||| |||||| || || || |||||||||| | | |||
Sbjct 1474 TTGGCCGATACATGCCACGAATGGTGGTTATACCGCCAGGCATGGATTTCAGCTA-CGTC 1532
Query 1428 T-GAGGTTCAAGAAGATACACCTG-AGGGTGATGGAGAT-TTA-GCTTC-CTTAGTAGGA 1482
| || || | ||| ||| | | |||||| ||| ||| | | | || | | ||
Sbjct 1533 TTGACA--CA-G--GATTCACAGGTACC-TGATGGTGATCTTAAG-T-CACTAATT-GGC 1583
Query 1483 G--GAACCGAGGGATCTTCTCCTAAAGCG-GTTCCAACTATCTGGTCTGAAGTTA-TGAG 1538
|| |||| | | | ||||| || || | || |||||||| | || || |
Sbjct 1584 CCTGA-CCGAA--ACCAGATAAAAAAGCCTGTGCCTCCAATATGGTCTGA-GATAATGCG 1639
Query 1539 GTTTTT-TACAAATCCTCACAAACCTATGAT-CTTG-GCATTATCTAGACCAGACC-CAA 1594
||||| | |||||||||| ||||| | || |||| || | ||| | || |||| |||
Sbjct 1640 ATTTTTCT-CAAATCCTCATAAACCAACAATACTTGCGC-TG-TCTCGTCCTGACCACAA 1696
Query 1595 AGAAGAACATAACCACTCTTC-TGAAAGCCTTTGGCGAATGTCGGCCTCTACGGGAGCTA 1653
||| || | ||||| || | ||||| ||||| ||||||| |||||| || || |||
Sbjct 1697 -GAAAAATGTCACCACA-TTGGTCAAAGCTTTTGGTGAATGTCAGCCTCTTCGAGAACTA 1754
Query 1654 GCTAATCTC--ACTT-TGATTATGGGAA-ATCGAGATGATATAGATGAGTTGTC-ATCTG 1708
|| || || |||| | |||| || || | ||||||| || || ||| || | | |
Sbjct 1755 GCCAACCTGGTACTTAT-ATTA-GGTAACA--GAGATGACATCGAAGAGATGCCTAA-TA 1809
Query 1709 GAAACGCTAGC-GTTCTTAC-AACCGT-CTTGAAA-CTCATCGACAAATATGATCTT-TA 1763
| | | | || ||||| | ||| || || ||| || || ||| | ||||| ||| ||
Sbjct 1810 GCAGCTC-AGTTGTTCTCATGAAC-GTACT--AAAGCTGATAGACCAGTATGA-CTTGTA 1864
Query 1764 CGGGTCT-GTCGCATATCCAAAGCATCATAAACAGTCTGATGTTCCTGATATATACCGAC 1822
||| | || || ||||| |||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 1865 CGGC-CAAGTAGCTTATCCCAAGCATCACAAACAATCTGAAGTTCCAGATATTTATCGT- 1922
Query 1823 TT-GCTGC-AAATACAAAGGGTGTTTTCATAAATCCAGCT-TTGGTTGAGCCTTTTGGCC 1879
|| || || ||| |||||||| || ||||| ||||||||| ||| | ||||| ||||| |
Sbjct 1923 TTAGCAGCCAAA-ACAAAGGGGGTCTTCATTAATCCAGCTCTTG-TGGAGCCGTTTGGTC 1980
Query 1880 TTACACTCATTGAGGCTGCAGCTCACGGACTTCCGATGGTAGCAACAAAGAA-TGGAGGA 1938
| || ||||||||||| || ||| | || || || || || || || | ||| ||||||
Sbjct 1981 TCACGCTCATTGAGGCAGCTGCTTATGGTCTGCCCATTGTTGCCACCA-GAAATGGAGGG 2039
Query 1939 CCAGTTGATAT 1949
|| ||||||||
Sbjct 2040 CCTGTTGATAT 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130994166266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5