BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04930.2
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919181 jgi|Araly1|919181|scaffold_100462.1 695 0.0
> Ahg919181 jgi|Araly1|919181|scaffold_100462.1
Length=944
Score = 695 bits (376), Expect = 0.0
Identities = 509/571 (89%), Gaps = 17/571 (3%)
Strand=Plus/Plus
Query 45 CAAATTCCTTCCGCCGTCGGAATGTCAATTCCCGATCCCAACTCCTCCGCATCTCTAACG 104
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1 CAAATTCCTTCCGCCGTCGGAATGTCTATTCCCGATCCCAACTCCTCCGCATCTGTAACG 60
Query 105 GTGTCTCCGTCTCTATCCACCGCATCGGAAACTCCGGTAACACCAGTAAACACTGTTAGA 164
|||||||||||||| |||||| ||||||||||||||| | ||||| ||||||||| |||
Sbjct 61 GTGTCTCCGTCTCTCTCCACCACATCGGAAACTCCGGCGATACCAGCAAACACTGTCAGA 120
Query 165 CCACCGCCGTCTCAGCCACCTCCTGCTCCGCCGCCACTACCGCCGCCGACTTACAGACCC 224
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 CCACCGCCGTCTCAGCCACCTCCTGCTCCGCCGCCACCACCGCCTCCGACTTACAGACCC 180
Query 225 ATAGCTCCGCTTCGCCACCCTAATCCGTTCCAACAACAATCTGCTTATAGTAATAACCTC 284
||||||||||||||||| ||||||||||| | |||||||||||| ||| ||||||||||
Sbjct 181 ATAGCTCCGCTTCGCCATCCTAATCCGTT--A-CAACAATCTGCTCATAATAATAACCTC 237
Query 285 TACGCACATTCGATTCCGGTCAGACGCCAAATTCAAGATCCGTCAGCTGTTCTTTACCCG 344
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 TACGCACAGTCAATTCCAGTCAGACGCCAAATTCAAGATCCGTCAGCAGTTCTTTACCCG 297
Query 345 TTTGCTCTACCGGGTCGAGGGTTTTCAGCCCGACCTGTTCGAGGATTCGTCGCAGATCCT 404
| | ||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 298 ---G-------G--TCGAGGGTTTTCAGCCCGACCCGTTCGAGGGTTCGTCGCTGATCCT 345
Query 405 TCCGTGACGGCTGGTAATCTGAGTGGGTACCCTCCTCGCCCGAGTTTTACTTACGATCCT 464
||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 346 TCCTTGACGGCCGGTAATCAGAGTGGGTACCCTCCTCGCCCGAGTTTTTCTTACAATCCT 405
Query 465 GGACCATATGAGCAGCGTCAAATGGAATCCTTGTTGCAGCAGTT-TATAAGGGAGAGAAA 523
||| || || || | ||||||||||||||||||||||||||| | |||||| ||||
Sbjct 406 CGACAATTTGGGCCGAGTCAAATGGAATCCTTGTTGCAGCAGTACT-TAAGGGGGAGACT 464
Query 524 TCCTCAGATTCGTCCATTACCACGCCTTGGATTGGGTTCTCCTGTTGGGTTGGGTCCCAT 583
|||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 465 TCCTCAGATTAATCCGTTACCACGCCTTGGATCGGGTTCTCCTGTTGGGTCGGGTCTCAT 524
Query 584 TAGAGCAAGTCCTCAATTTCTGCAACCGCGG 614
|||| ||||||||| |||||||||||||||
Sbjct 525 GAGAGGAAGTCCTCAGTTTCTGCAACCGCGG 555
Score = 569 bits (308), Expect = 1e-161
Identities = 348/367 (95%), Gaps = 3/367 (1%)
Strand=Plus/Plus
Query 705 GTTGCCCCGCCCCCAACTTCAATTCTAGACACTAGCAGGAATAGAAAGGCCAGAAGCAAG 764
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 556 GTTGCCCCGCCCCCAACTTCAATTCTAGACACTGGCAGGAATAGAAAGGCCAGAAGCAAG 615
Query 765 GATGGGGCTCTTGCCGTTGTTAGAGGGAGAAAGGTCCGAATCACTGAGGGGTCTTCTTCT 824
||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 616 GATGGGGCTCTTGTTGTTGTTAGAGGGAGAAAGGTCAGAATCACTGA-GGG--AGCTTCT 672
Query 825 CTTTATTCACTTGGTCGATCGTGGTTGAAAAATGGTGCTCACGTTGGAATTCAGCCGCAA 884
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 673 CTTTATTCACTTGGTCGATCATGGTTAAAAAATGGTGCTCACGTAGGAATTCAGCCGCAA 732
Query 885 AGGAGTGGTATAATGAAACCTTTGCCAAAACCGTTACCTGTGGATTTAACAACAGAGACA 944
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 733 AGGAGTGGTATAATGAAACCTTTGCCAAAGCCGTTACCTGTGGATATAACAACAGAGACA 792
Query 945 AGTGTACCAGATGATCCAGATGAAGAATCAGCGGATGAAGACAAAGAGGACGAGGAAGCT 1004
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 793 AGTGTGCCAGATGATCCAGATGAAGAATCAGCTGATGAAGAAAAAGAGGACGAGGAAGCT 852
Query 1005 GTAAAGCAATTATCTGAGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTC 1064
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTAAAGCAATTATCAGAGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTC 912
Query 1065 CGTGCAC 1071
|| ||||
Sbjct 913 CGAGCAC 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5