BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04940.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919182 jgi|Araly1|919182|scaffold_100463.1 1404 0.0
> Ahg919182 jgi|Araly1|919182|scaffold_100463.1
Length=864
Score = 1404 bits (760), Expect = 0.0
Identities = 833/868 (96%), Gaps = 5/868 (1%)
Strand=Plus/Plus
Query 140 AGGCATTTTAGTTGGTAAGGATGATAACTGGATACAGCACGCCAAGTGCACATGTTCTAA 199
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 1 AGGCATTTTAGTTGGTAAGGATGATAATTGGGTGCAGCACGCCAAGTGCACATGTTCTAA 60
Query 200 TGAGCTCTCGGGCATTCAAGTCATCATCATATAGAGCTGCAGCAGGACAGACTCAACATT 259
||| |||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||
Sbjct 61 CGAGTTCTCGGGCATTCAAATCATCATCATACAGAGCTGCATCAGGACGGACTCAACATT 120
Query 260 ATCTTGCTCGAAGTTCATTGCCTGTCGTAAAGAACTCGTGGGGATCACCACCTTCACC-T 318
||||||||||||| |||| | ||||| |||||||||| ||||||| |||||||||| |
Sbjct 121 ATCTTGCTCGAAGCTCATCGTCTGTCATAAAGAACTCTTGGGGAT---CACCTTCACCAT 177
Query 319 TTCAATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCT 378
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TT-AATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCT 236
Query 379 TCTCTGCTTCTGAATGGAGAACAAGGTAGTCTATCTGGTACATTACCTGTGTTACCTGTC 438
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 237 TCTCTGCTTCTTAATGGAGAACAAGGTAGTCTGTCTGGTACATTACCTGTGTTACCCGTC 296
Query 439 CGCAGAAAAACTCTTTTGACTCCACGAGCGTCAAAAGATGTACCTTCTAGCTTCCGATTT 498
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 297 CGCAGAAAAACTCTTTTGACTCCACGAGCATCAAAAGATGTTCCTTCTAGCTTCCGATTT 356
Query 499 CCCCCGATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCTTGCCTGCCTTACCTA 558
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 CCCCCAATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCATGCCTGCCTTACCTA 416
Query 559 ATGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTA 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTA 476
Query 619 GAAGATTTTGAATTCTTAACCTACCCATTTCTAGGCGCCATAGGAAGATTACCAAGCTGG 678
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 477 GAAGATTTTGAATTCTTAACCTACCCATTTCTGGGGGCCATCGGAAGATTACCAAGCTGG 536
Query 679 TTCCTCATGGCTTACTTTTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCT 738
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCCTCATGGCTTACTTCTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCT 596
Query 739 CACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATA 656
Query 799 GGGACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTC 858
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGAACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTC 716
Query 859 TGGACTGCTGTTGCGTTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTT 918
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGGACCGCTGTTGCATTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTT 776
Query 919 GCGGGTATGTACGCAGACATCCCGTTTGTCTGTGATGCTGCCTATATCCAGATTCCGTAC 978
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 777 GCGGGTATGTACGCAGACATCCCATTTGTCTGTGATGCTGCCTATATCCAGATTCCGTAC 836
Query 979 GACTAAGAAGAAACAACATTGGATCGTT 1006
|||||||||||||||||||| |||||||
Sbjct 837 GACTAAGAAGAAACAACATTAGATCGTT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5