BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04945.3
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470480 jgi|Araly1|470480|fgenesh2_kg.1__434__AT1G04945.2 2296 0.0
Ahg919182 jgi|Araly1|919182|scaffold_100463.1 1258 0.0
> Ahg470480 jgi|Araly1|470480|fgenesh2_kg.1__434__AT1G04945.2
Length=1583
Score = 2296 bits (1243), Expect = 0.0
Identities = 1471/1578 (93%), Gaps = 27/1578 (2%)
Strand=Plus/Plus
Query 974 ATTCGGTCTGCGAAGAGTGCAAACAAAATCCATGGAAGTACAAATGTCCCGGATGTTCAA 1033
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 12 ATTCGGTCTGCGAAGAGTGCAAGCTAAATCCATGGAAGTACAAATGTCCTGGATGTTCGA 71
Query 1034 TTCGATCGTGTGCCCTTCCCTGTGTGAAAGCCCACAAGCAGCGAACAGGTTGTACCGGAA 1093
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 72 TTCGATCGTGTGGTCTTCCTTGTGTGAAAGCCCACAAGCAGCGAACAGGCTGTACCGGAA 131
Query 1094 AAAGGAAGTTCACCGACGTCGTTCCCCTCTCCAAGTTCGACGACAATCTCCTCCTCTCTG 1153
||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 132 AAAAGAAGCTCACCAACGTCGTTCCCCTCTCCAAGTTCGACGATAATCTCCTCCTTTCTG 191
Query 1154 ACTACAATATGCTTGAGGAAACAAAAAGAGTAGCCGAGTCTGCTCTGAGAAGGA-GAAGT 1212
|||||| |||||||||||||||||||||||| || |||||||||||||||| || ||| |
Sbjct 192 ACTACATTATGCTTGAGGAAACAAAAAGAGTGGCGGAGTCTGCTCTGAGAACGAGGAA-T 250
Query 1213 CAATTATGCAAAAATCATTATTCTTATAAGTTACCCTATCTTCTTAAGAGCCTTCAAAGT 1272
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 251 CAATTATGCAAAAATCATCATTCTTATAAGTTACCCTATCTTCTTCGGAGCCTTCAAAGT 310
Query 1273 GCTGCTTATAGCCGCAGAACTAAGCTATGGTATCTCCCTAGTGGAATGTTAAAGAGGGAA 1332
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 311 GCTGCTTATAGCCGCAGAACCAAGCTATTGTATCTCCCTAGTGGAATGTTAAAGAGGGAA 370
Query 1333 AATAATCAGTCCAGATACGATAATAGGAGCAAGTGTATCTCGTGGACAATAGAGTGGCGG 1392
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 371 AACAATCAGTCAAGATACGATAATAGGAGCAAGTGCATCTCGTGGACAATTGAGTGGCGG 430
Query 1393 TTTCACTCTACAGATGTCATTCTTGTTGACCATGGAGTTGGTGAAGATAGAAACCTATGC 1452
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 431 TTTCACTCTACAGATGTGATTCTTGTTGATCATGGAGTTGGTGAAGATACAAATCTATGC 490
Query 1453 TCAGTGATAAAGAATCATCTCAAGCCTGGCCCCTGGATTCACAAGCTCAAGCCTTTTTGT 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TCAGTGATAAAGAATCATCTCAAGCCTGGCCCCTGGATTCACAAGCTCAAGCCTTTTTGT 550
Query 1513 GATGTGGATCTTGATTCTCTCAAACTTTTTATACGCCAATACCCAAAGGGTGCAAAGGCT 1572
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 551 GATGTGGATCTTGATTCTCTTAAACTTTTTATACGCCAATACCCAAAGGGTGCAAAGGCT 610
Query 1573 CCTTTCAAGGAGCTGGACATCAAAGCTCCTTTGAGGAAACAGCTTGCCAAAGTTGTTATA 1632
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 611 CCTTTCAAGGAGCTGGACATCAAAGCTCCTTTGAGGCAACAGCTTGCCAAAGTAGCTATC 670
Query 1633 TTAGAGTACCCGGTGATCCATGTATATCTACCTTCACAGAGCTATGAA-TTTAAAGTTAT 1691
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 671 TTAGAGTACCCGGTGATCCATGTATATCTACCTTCACAGAGCTAT-AACTTTGAAGTTAT 729
Query 1692 CAAAGACT-TTAACACGACACCTAATCCTAATGATTCGTTATACGATGGTCATGGATGCA 1750
||| | | | |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 730 CAACCA-TGTAAACACGACACCTAATCCTAATGATTCCTTATATGATGGTTATGGATGCA 788
Query 1751 CAAATGGTATAACCTTCCGAGAAGAAGAAATAGAAGAAGACGACATTGACTCCTTTGAGC 1810
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 789 CTAATGGTACAACCTTCCGAGAAGAAGAAATAGAAGAAGACGACATCAACTCCTTTGAGC 848
Query 1811 CAGAGGTTCTTG-GTCTTATGAAACAAATGAACTATAACCCGTGTCTGCGAGTCTCAGAG 1869
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CAAAGGTTCTTGAG-CTTATGAAACAAATGAACTATAACCCGTGTCTGCGAGTCTCAGAG 907
Query 1870 AAAAGCAAGGCAGAGGGCGTTGGTACCAACAACTCAAATCCTCAGGTTGATACCACAGAA 1929
||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||
Sbjct 908 GAAAGCAAGGCAGAGGGCGTTGGTACCAACAAGTCAAATCCTCTGGTTGATCCCAAAGAA 967
Query 1930 CAAGAAGATGCCGGTAACATGGAGCTTGAATTTGAGCAAGGGTTAATAGACACATACTCA 1989
||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 968 CAAGAAGATGCTGGTAACATGGAGCTTGAGTTTGAGGAAGGGTTGATAGACACATACTCG 1027
Query 1990 GATCTTTTTGCGGAGATGAACCCAGGTGACTATTTCAACTTTGAATGTGAATTTGCAAAG 2049
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GATCTTTTCGCGGAGATGAGCCCAGGTGACTATTTCAACTTTGAATGTGAATTTGCAAAG 1087
Query 2050 GGGTTGGATTCGGATGATAATTGCAATCTCCAAAATTTAGATACTGATTTCATCGCTGAT 2109
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GGATTGGATTCGGATGATAATTGCAATCTCCAAAATTTAGATACTGATTTCATCGCTGAT 1147
Query 2110 GGACTAGATTTAGAAGAAGGGGAAATCGTCGAATGATGGTCATAGTCTTGTTCTGGCAAA 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GGACTAGATTTAGAAGAAGGGGAAATCGTCGAATGATGGTCATAGTCTTGTTCTGGCAAA 1207
Query 2170 AAGGAATTACTCTCTGTGAAACATTTTTG------AG--GATTATGTTCATGCCTGAAGC 2221
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1208 AAGAAATTACTATCTGTGAAACATTTTTGGTCGCCAGAAGATTATGTTCATGCCTGAAGC 1267
Query 2222 TCTCTTGTTCGAGCACATTAGCTATACTTGGTAATAGCCAAAGCTTTTACTGGAATGCAA 2281
|||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1268 TCTCTTGTTCAAGCACATTAGCTATTCTTGGCACCAGCCAAAGCTTTTACTGGAATGCAA 1327
Query 2282 TAAGCCACAGCACTGATGGTCAT-AAGTTTTCGGTCTGGGCTTTGATCAACAGGTATTTC 2340
|| ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||
Sbjct 1328 TA-GCCACAGCACTGATGATCATTAAGTTTTCGGTTTGGGCTTTGATCAACATGTATTT- 1385
Query 2341 TTTTGTAGTAAACCAGATTACTAGGCTGTTCTGTGGTTTGTAGCAAACTTGATTGTTTAC 2400
||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1386 TTT-GTTGTAAACCAGATTACTAGGCTGTTCTGTAGTGTGTAGCAAACTTGATTGTTTAC 1444
Query 2401 ATACAAGAT-AGTTAA-CTTAAGA-A-TGTCTCCGAAACTTTTGTTCAGTCTTATCCTCC 2456
||||||||| |||||| ||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 1445 ATACAAGATTAGTTAAACTTAAGAGAATGTCTCCGAAACTTTTGTTCAGACTTATCCTCC 1504
Query 2457 TATAGATCCTCATAAATTAATCTTGTTGTCTTTCAGATCTTCTTT-ATAGTCAATGTAAT 2515
|| ||||||| |||||||||||||||||| | ||||| ||| ||| ||||||||||||||
Sbjct 1505 TACAGATCCTTATAAATTAATCTTGTTGTGTGTCAGACCTT-TTTCATAGTCAATGTAAT 1563
Query 2516 A-CAGACCAAACCTTGTA 2532
| |||||||||| |||||
Sbjct 1564 AACAGACCAAACTTTGTA 1581
> Ahg919182 jgi|Araly1|919182|scaffold_100463.1
Length=864
Score = 1258 bits (681), Expect = 0.0
Identities = 750/783 (96%), Gaps = 5/783 (1%)
Strand=Plus/Plus
Query 192 GGCATTTTAGTTGGTAAGGATGATAACTGGATACAGCACGCCAAGTGCACATGTTCTAAT 251
|||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 2 GGCATTTTAGTTGGTAAGGATGATAATTGGGTGCAGCACGCCAAGTGCACATGTTCTAAC 61
Query 252 GAGCTCTCGGGCATTCAAGTCATCATCATATAGAGCTGCAGCAGGACAGACTCAACATTA 311
||| |||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 62 GAGTTCTCGGGCATTCAAATCATCATCATACAGAGCTGCATCAGGACGGACTCAACATTA 121
Query 312 TCTTGCTCGAAGTTCATTGCCTGTCGTAAAGAACTCGTGGGGATCACCACCTTCACC-TT 370
|||||||||||| |||| | ||||| |||||||||| ||||||| |||||||||| ||
Sbjct 122 TCTTGCTCGAAGCTCATCGTCTGTCATAAAGAACTCTTGGGGAT---CACCTTCACCATT 178
Query 371 TCAATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCTT 430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 T-AATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCTT 237
Query 431 CTCTGCTTCTGAATGGAGAACAAGGTAGTCTATCTGGTACATTACCTGTGTTACCTGTCC 490
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 238 CTCTGCTTCTTAATGGAGAACAAGGTAGTCTGTCTGGTACATTACCTGTGTTACCCGTCC 297
Query 491 GCAGAAAAACTCTTTTGACTCCACGAGCGTCAAAAGATGTACCTTCTAGCTTCCGATTTC 550
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 298 GCAGAAAAACTCTTTTGACTCCACGAGCATCAAAAGATGTTCCTTCTAGCTTCCGATTTC 357
Query 551 CCCCGATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCTTGCCTGCCTTACCTAA 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CCCCAATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCATGCCTGCCTTACCTAA 417
Query 611 TGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTAG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTAG 477
Query 671 AAGATTTTGAATTCTTAACCTACCCATTTCTAGGCGCCATAGGAAGATTACCAAGCTGGT 730
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 478 AAGATTTTGAATTCTTAACCTACCCATTTCTGGGGGCCATCGGAAGATTACCAAGCTGGT 537
Query 731 TCCTCATGGCTTACTTTTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCTC 790
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCTCATGGCTTACTTCTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCTC 597
Query 791 ACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATAG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATAG 657
Query 851 GGACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTCT 910
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTCT 717
Query 911 GGACTGCTGTTGCGTTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTTG 970
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGACCGCTGTTGCATTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTTG 777
Query 971 CGG 973
|||
Sbjct 778 CGG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95454153970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5