BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04950.1
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333812 jgi|Araly1|333812|fgenesh1_pg.C_scaffold_1000377 2606 0.0
> Ahg333812 jgi|Araly1|333812|fgenesh1_pg.C_scaffold_1000377
Length=1665
Score = 2606 bits (1411), Expect = 0.0
Identities = 1591/1673 (95%), Gaps = 31/1673 (2%)
Strand=Plus/Plus
Query 177 ATGAGCATTGTACCTAAGGAAACGGTTGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCATTGTACCTAAGGAAACGGTGGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 60
Query 237 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTTGAGTATCGTGTCCGAGAGATC 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTCGAGTATCGTGTCCGAGAGATC 120
Query 297 ATGCAGGAAGCTATCAAATGCATGCGTCACTCAAAGAGAACGACTTTAACAGCTTCGGAT 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATGCAGGAAGCTATCAAATGCATGCGTCATTCAAAGAGAACGACTTTAACAGCTTCGGAT 180
Query 357 GTAGATGGTGCTCTCAACTTAAGGAACGTTGAGCCGATATATGGATTTGCCTCAGGAGGG 416
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GTAGATGGTGCTCTCAACTTGAGGAACGTTGAGCCGATATATGGCTTTGCCTCAGGAGGA 240
Query 417 CCATTTCGTTTTAGAAAAGCTATTGGACATCGCGATTTGTTCTACACTGATGACAGAGAA 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CCATTTCGTTTTAGAAAAGCTATTGGGCATCGCGATTTGTTCTACACTGATGACAGAGAA 300
Query 477 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTGCCAAAAGCTCCCCTTGATACTGAAATT 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTACCAAAAGCTCCCCTTGATACTGAAATT 360
Query 537 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 420
Query 597 GAAGTCATTAGAGCACCTGCAGAAACCAAAATCCATGAACAAAAAGACGGACCTCTTATT 656
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 421 GAAGTCATTAGAGCACCTGCAGAAAACAAAATCCATGAACAAAAAGACGGACCTCCTATT 480
Query 657 GACGTTAGGCTACCAGTGAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACGTTAGGCTACCAGTAAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 540
Query 717 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTCCTCTGTATAAAGAAGCATTAGTGAGC 776
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 541 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTGCTCTGTTTAAAGAAGCATTAGTGAGC 600
Query 777 TTGGCCTCAGACTCAGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGC---T 833
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 TTGGCCTCAGACTCCGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGCTGAT 660
Query 834 ---G-------ATG--------AGGTTTCAAATGGCTTAAATGACTTCCGACTCCTGTTT 875
| ||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct 661 GAGGTAACATTATGCACCACCAAGGTTTCAAATGGTTTAAAAGACTTTCGACTCCTGTTT 720
Query 876 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATACACATAGAACCTTAT 935
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATAAACATAGAACCTTAT 780
Query 936 CTGCACCAGTTGATGCCATCTGTTGTAACATGCCTTGTATCAAGAAAGCTTGGAAATAGA 995
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 CTGTACCAGTTGATGCCATCTGTTGTAACGTGCCTTGTATCAAGAAAGCTTGGAAATAGA 840
Query 996 TTTGCTGACAACCACTGGGAACTCAGAGATTTTGCGGCAAATCTGGTTTCACTGATATGT 1055
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 841 TTTGCTGACAACCATTGGGAACTCAGAGATTTTGCGTCAAATCTGGTTGCACTGATATGT 900
Query 1056 AAAAGGTATGGAACCGTTTATATAACTCTTCAGTCTCGTCTTACCAGAACTTTAGTCAAT 1115
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 901 AAAAGGTACGGACCCGTTTATATTACTCTTCAGTCTCGTCTTACAAGAACTTTAGTCAAT 960
Query 1116 GCACTGCTGGACCCAAAGAAGGCTTTGACTCAGCACTATGGTGCGATTCA-AGGATTAGC 1174
|||||| ||||||||||||| ||||||||||||||||||||||| ||| | |||||||||
Sbjct 961 GCACTGTTGGACCCAAAGAAAGCTTTGACTCAGCACTATGGTGCAATT-AGAGGATTAGC 1019
Query 1175 AGCTTTGGGGCACACTGTTGTACGCCTTCTT-ATTCTATCAAATCTCGAACCATATCTAA 1233
|||||||||||||| | ||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1020 AGCTTTGGGGCACAATATTGTACGCCTT-TTAATTCTATCAAATCTCGAACCGTATCTAA 1078
Query 1234 GTCTTCTCGAACCTGAATTGAATGCTGAGAAGCaaaaaaaTCAGATGAAGATCTACGAAG 1293
|||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 GTCTTCTCCAACCTGAATTGGATGCTGAGAAGCAAAAAAATCAGATGAAGAACTACGAAG 1138
Query 1294 CTTGGCGTGTATATGGAGCCTTGCTGCGTGCTGCAGGCTTGTGTATACATGGCCGGCTTA 1353
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1139 CTTGGTGTGTATATGGAGCCTTGCTGCGAGCTGCAGGCTTGTGTATACATGACCGGCTTA 1198
Query 1354 AAATCTTCCCACCTTTACCATCTCCGTCACCAAGTTTTCTCCATAAGGGAAAGGGAAAGG 1413
||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1199 AAATCTTCCCACCTTTACCATCTCCATCACCAAGTTTCCTCCAT------AAGGGAAAGG 1252
Query 1414 GAAAGATAATCAGTACTGATCCCCACAAGCGGAAGCTGAGTGTAGATTCTTCAGAAAACC 1473
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1253 GAAAGATAATCAATACTGATCCCCACAAGCGGAAGCTGAGCATAGATTCTTCAGAAAACC 1312
Query 1474 AATCACCGCAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTACATTCACAAGATC 1533
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1313 AATCGCCACAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTGCAATCACAAGATC 1372
Query 1534 AATCTGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1593
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AATCCGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1432
Query 1594 ACTCTGTTCAGCCATCCTCATCAGAACAAGCCTCTGATGCTAACGAATCTGAAAGCAGAA 1653
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1433 ACTCTGTTCAGCCATCCTCATCAGAACAAGCTTCTGATGCTAACGAATCTGAAAGCAGAA 1492
Query 1654 ATGGAAAGGTGAAAGAAAGCGGCAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1713
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATGGAAAGGTGAAAGAAAGCGGTAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1552
Query 1714 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1612
Query 1774 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1826
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82503470670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5