BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04960.2
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470484 jgi|Araly1|470484|fgenesh2_kg.1__438__AT1G04960.1 1620 0.0
> Ahg470484 jgi|Araly1|470484|fgenesh2_kg.1__438__AT1G04960.1
Length=1228
Score = 1620 bits (877), Expect = 0.0
Identities = 998/1055 (95%), Gaps = 13/1055 (1%)
Strand=Plus/Plus
Query 549 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAACT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAGCT 237
Query 609 TCAAGACTTACTCAATGGTGCTCAAGGAGTTGAAAGCACTCCTTTTAAGTATGACGGTGC 668
|||||| |||||||| || ||| ||||||||||||||||||| ||||||||||| |||||
Sbjct 238 TCAAGATTTACTCAAAGGGGCTGAAGGAGTTGAAAGCACTCCATTTAAGTATGATGGTGC 297
Query 669 ACTCCTTGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 728
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTCCTAGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 357
Query 729 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAGTGGCTATGCATCTTACCTGGTTCC 788
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAATGGCTATGCATCTTACCTGGTTCC 417
Query 789 AGCGGCTGCCGTTGGAGCTATGGGGTACTGCTACATGTGGTGGAAGGGCTGGTCGTTTTC 848
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 418 TGCGGCTGCCGTTGGAGCTATGGGCTACTGCTACATGTGGTGGAAGGGCTGGTCATTTTC 477
Query 849 AGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 537
Query 909 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGGAAACATCTTTCTCAGAAGCTAGC 968
|||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 538 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGAAAACATCTTTCTAATAAGCTAGC 597
Query 969 GACCTTGGATTGGAAGGTGGAAGAGCAGAATGAGACATCTAAAATGATCTTAAGTGATGT 1028
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 GACCTTGGATTGGAAGGTGGAAGAGCAGAACGAGACATCTAAAATGATCTTAAGTGATGT 657
Query 1029 TACTGAGATGAGATCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTTAATGAAAT 1088
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 AACTGAGATGAGGTCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTAAATGAAAT 717
Query 1089 GATTTCTGGAATAGAAGGGAAGATTGAAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 1148
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GATTTCTGGAATAGAAGGGAAGATTGGAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 777
Query 1149 TGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGACAGCACAAGTACTAAAGTATT 1208
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 778 AGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGATAGCACAAGCACTAAAGTATT 837
Query 1209 TCAGGATGTTGGTGAGAGATTACCTATTGATGGAAAACCATCCACTAATACTTCTCTCTC 1268
|||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||
Sbjct 838 TCAGGATGTTGGTGCGAGATTACCTATCGATGGAAAACCATATACTAATAATTCTCTCTC 897
Query 1269 TGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAATGTAATACACAAGCCGGTTAT 1328
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 898 GGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAACGTAATACACAAGCCGGTTTT 957
Query 1329 GGCGAAAGAAATTAT-GGTGATGGGGGAAAAAACAAAAGTCACTGCAGCGG-GA-A-GAA 1384
|||||||||||| | |||| ||| |||||||||||||| | | ||| | | || | |||
Sbjct 958 GGCGAAAGAAAT-AGCGGTGGTGGAGGAAAAAACAAAAG-C-C-GCAACCGTGACAAGAA 1013
Query 1385 GCAGAGTTCATAGAGCGTTTCCAGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1444
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCAGAGTTCATAGAGCGTTTCCGGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1073
Query 1445 CCTAATATTATTTTGGTTGATATACAAAGAAATTGCTTGTATTCGTCCCAAATTCTGATA 1504
||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1074 CCTAATACTATTTTGGCTGATATACGAAGAATTTGCTTGTATTCGTCCCAAATTCTGATA 1133
Query 1505 CTGGGACTGGCAATTATTTTTTCATGTAAAAA-GAAGAAAA-AT---CTACATATGTTAT 1559
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1134 CTGGGACTGGCAATTATTTTTTCATGTAAAAAAGAAGAAAAGAAAAACTACATATGTTAT 1193
Query 1560 TGCATCCACCAACAATTTGGTTTGCCCCTAATTAT 1594
||||||||||||||||||||||| |||||||||||
Sbjct 1194 TGCATCCACCAACAATTTGGTTTTCCCCTAATTAT 1228
Score = 178 bits (96), Expect = 1e-43
Identities = 172/204 (84%), Gaps = 23/204 (11%)
Strand=Plus/Plus
Query 49 TTTGAAAAGTATTTATCTTTGTGGTAAATCAAAGCTAAAATTGAGGTCTAAAGGGCAAAA 108
||| |||||||||||||||| |||| |||||||||||||||||||||||| | || |
Sbjct 1 TTTAAAAAGTATTTATCTTTCTGGTCAATCAAAGCTAAAATTGAGGTCTAGA-GG----A 55
Query 109 GGGTGTCATAATTGGTCTCTCGCGGTGGCTTGGCGACACGGAACAGAGAATTAATCGAGA 168
| | |||| ||||||| |||||||||||||||||||||||||||| | | |
Sbjct 56 -CG-G---TAATCGGTCTCTTACGGTGGCTTGGCGACACGGAACAGAGAA-T--T----A 103
Query 169 ATCTTTTTCAGCTTGTAACCGGAATTCATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 228
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 104 A------TCAGCTTGTAACCGGAATTTATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 157
Query 229 GTCCTTATCCTACTCGGCGCAGGT 252
||||||||||||||||||||||||
Sbjct 158 GTCCTTATCCTACTCGGCGCAGGT 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5