BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04970.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919186 jgi|Araly1|919186|scaffold_100467.1 2571 0.0
> Ahg919186 jgi|Araly1|919186|scaffold_100467.1
Length=1552
Score = 2571 bits (1392), Expect = 0.0
Identities = 1491/1539 (97%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 24 aaaaaaaGCTTTGAATATCCGCCATGGATGTTGGACGATGCTTTCTCTTTCTTCTATTAC 83
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3 AAAAAAAGCTTTGAATTTCCGCCATGGATGCTGGACGATGCTTTCTCTTTCTTCTATTAC 62
Query 84 CAAGTTTCTTCTTCTTGCCTTCACAAACGCAGAGCACCGATTCATTCACATCGGTTCTCG 143
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 CAAGTTTCTTCTTCTTGCCTTCACAAACGCAGAGCAGCGATTCATTCACATCGGTTCTCG 122
Query 144 TATCTCAAAACGGACTCGATTTCGTCAAAAATCTTCTAGTTAACAAAGCTATCGCGTCGA 203
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 TATCTCAAAACGGACTCGATTTCGTCAAAAATCTTCTAGTTAACAAAGCAATCGCGTCGA 182
Query 204 TTATACCTCTCCAGATTCCCAGAATTGAGAAATCTATGAAAATCCCGTTCCTTGGAGGAA 263
|||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct 183 TTATACCTCTCCAGATTCCCAGGATCGAGAAATCTGTGAAAATCCCGTTCCTCGGAGGAA 242
Query 264 TCGATGTTGTTGTCTCGAATCTCACGATATACGAGCTTGACGTTGCGTCATCTTATGTTA 323
||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 243 TCGATGTCGTTGTTTCGAATCTGACGATATACGAGCTTGACGTTGCGTCGTCTTATGTTA 302
Query 324 AGCTTGGTGAGACAGGTGTTGTCATCGTCGCTTCAGGGACGACTTGTAATTTGAGTATGA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGCTTGGTGAGACAGGTGTTGTCATCGTCGCTTCAGGGACGACTTGTAATTTGAGTATGA 362
Query 384 ATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATATCTGATCAGGGTATTG 443
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 363 ATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATCTCTGATCAGGGTATTG 422
Query 444 CATCTGTTCAGGTTCAAGGCATGGAAATCGGGCTCTCTCTAGGCTTGAAAAGTGATGAAG 503
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 423 CATCTGTTCAGGTTCAAGGCATGGAAATCGGGCTGTCTCTAGGCTTGAAAACTGATGAAG 482
Query 504 GAGGCTTAAAACTTTCTCTTTCGGAATGTGGATGCCATGTGGAAGACATTACCATTGAGT 563
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 483 GAGGCTTAAAACTTTCCCTTTCGGAATGTGGATGCCATGTGGAAGACATCACCATTGAGT 542
Query 564 TGGAAGGAGGAGCATCATGGTTTTATCAGGGGATGGTTAATGCATTTAAAGACCAAATTG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGGAAGGAGGAGCATCATGGTTTTATCAGGGGATGGTTAATGCATTTAAAGACCAAATTG 602
Query 624 GGTCAAGTGTGGAAAGTACCATTGCCAAGAAACTCACGGAAGGAGTATCAGACCTTGATT 683
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 603 GGTCAAGTGTGGAAAGTACCATTGCCAAGAAACTCACTGAAGGAGTATCAGACCTTGATT 662
Query 684 CATTCCTACAAAGCCTTCCAAAGGAAATCCCAGTGGATGATAATGCTGACCTTAATGTCA 743
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 CATTCCTACAAAACCTTCCAAAGGAAATCCCAGTGGATGATAATGCTGCCCTTAATGTCA 722
Query 744 CTTTCACCAGTGATCCTATATTGAGAAATTCATCTATCACTTTTGAGATTGATGGCTTGT 803
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CTTTCACCAGTGATCCTATTTTGAGAAATTCATCTATCACTTTTGAGATTGATGGCTTGT 782
Query 804 TCACCAAAGGAGAAACAAATCAAGTCTTAAAATCCTTCTTCAAAAAGTCTGTATCTTTAG 863
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 783 TCACCAAAGGAGAAACAAATCAAGTCTTAAAGTCCTTCTTCAGAAAGTCTGTATCTTTAG 842
Query 864 TTATCTGCCCTGGAAATTCTAAAATGCTCGGAATTTCAGTTGACGAAGCTGTTTTTAACT 923
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 843 TTATCTGCCCTGGAAATTCTAAAATGCTCGGAATTTCAGTGGATGAAGCTGTTTTTAACT 902
Query 924 CTGCTGCAGCTTTGTACTATAATGCAGACTTTGTGCAATGGGTTGTGGATAAAATACCAG 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CTGCTGCAGCTTTGTACTATAATGCAGACTTTGTGCAATGGGTTGTGGATAAAATACCAG 962
Query 984 AGCAGTCTCTTTTAAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAAGAAAT 1043
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 963 AGCAGGCTCTTTTAAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAAGAAGT 1022
Query 1044 ACCCGAACCAGGATATGAATCTGAACATCAGTTTGTCCTCACCTCCGCTTGTAAAGATAT 1103
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 1023 ACCCGAACCAGGATATGAGTCTGAACATCAGTTTGTCTTCACCTCCGCGTGTAAAGATAT 1082
Query 1104 CAGAGCAATACGTTGGAGCTAATGTTAATGCAGACCTAGTAATCAATGTTCTAGATGCAA 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CAGAGCAATACGTTGGAGCTAATGTTAATGCAGACCTAGTAATCAATGTTCTAGATGCAA 1142
Query 1164 ACCAAGTAATACCTGTAGCTTGCATCTCCTTGATGATCCGGGGATCTGGTGCTCTCAGAG 1223
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GCCAAGTTATACCAGTAGCATGCATCTCCTTGATGATCCGGGGATCTGGTGCTCTCAGAG 1202
Query 1224 TCATGGGCAATAACCTTGGAGGCAGCGTAAGTTTAGAAGATTTCTCCATGTCTTTGAAAT 1283
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCATGGGTAATAACCTTGGAGGCAGCGTAAGTTTAGAAGATTTCTCCATGTCTTTGAAAT 1262
Query 1284 GGAGCAACATTGGAAATCTCCATCTGCATCTTCTTCAGCCAATAGTGTGGACTGTTATAC 1343
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GGAGCAACATTGGTAATCTCCATCTGCATCTTCTTCAGCCAATAGTGTGGACTGTTATAC 1322
Query 1344 AAACAGTGTTTGTGCCATATGCAAATGACCACCTAGAAAAGGGATTCCCGTTGCCCATAA 1403
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1323 AAACAGTGTTTGTGCCATATGCAAATGACCATCTAGAAAAGGGATTCCCGTTGCCCATAA 1382
Query 1404 TGCACGGATTCACACTTCAGAATGCGGAAATCATCTGCTCA-GAATCTGAAATCACAGTT 1462
| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1383 TCCACGGATTTACACTTCAGAATGCGGAAATCATCTGCTCAAGC-TCTGAAATCACAGTT 1441
Query 1463 TGCAGCGATGTCGCCTACTTGGATTCGTCCCAACAGCCTCAATGGC-TTTGAAGCTACCA 1521
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1442 TGCAGCGATGTCGCCTACTTGGATTCGTCCCAACAGCCTCAATGGCGTTTAAAGCTACCA 1501
Query 1522 CGATCTACGACTTGGAAACCTAACTCGTTGTAGTTTACA 1560
|||||||||||||||||||| |||| | ||||||||||
Sbjct 1502 CGATCTACGACTTGGAAACCCAACT--T-GTAGTTTACA 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5