BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04980.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470488 jgi|Araly1|470488|fgenesh2_kg.1__442__AT1G04980.1 2368 0.0
Ahg482234 jgi|Araly1|482234|fgenesh2_kg.4__1294__AT2G32920.1 1181 0.0
> Ahg470488 jgi|Araly1|470488|fgenesh2_kg.1__442__AT1G04980.1
Length=1473
Score = 2368 bits (1282), Expect = 0.0
Identities = 1423/1489 (96%), Gaps = 18/1489 (1%)
Strand=Plus/Plus
Query 1 GAGAAGAAAGAGAGGGAAGAAACTATGGAAAGAAAAATGTACAAATCAACGGTGTTCCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 GAGAAGAAAGAGAGGGAAGAAACTATGGAAAGAAAAATGTACAAATCAACGTTGTTCACA 60
Query 61 ATTTGCTGTCTGTTGTTTGCCTTGTTCGATCGCGGTAATGCTCTCTATGGATCTTCGTCG 120
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 ATTTGCTGCCTGTTGTTTGCCTTGTTCGATCGCGGCAATGCTCTCTATGGATCTTCTTCG 120
Query 121 CCTGTGCTTCAACTCACTCCTTCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGAGTC 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CCTGTTCTTCAACTCACTCCATCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGTGTC 180
Query 181 GTTTTGGTAGAGTTCTTTGCGCCATGGTGCGGTCATTGTCAATCTCTAACACCAACTTGG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTTTTGGTAGAGTTCTTTGCGCCATGGTGTGGTCATTGTCAATCTCTAACACCAACTTGG 240
Query 241 GAGAAAGTTGCCAGTACTTTGAAAGGTATTGCTACTGTGGCAGCCATTGATGCTGACGCT 300
||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAAGGTTGCTAATACCTTGAAAGGTATTGCTACTGTGGCAGCCATTGATGCTGACGCT 300
Query 301 CACAAGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTCGTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CACAAGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTTGTT 360
Query 361 CCCGGGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCCGGGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAATTT 420
Query 421 GCTATCAAGCAGATAAAGGCACTGTTAAAGGATCGTTTGGATGGTAAAACAAGTGGCACA 480
|||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||| |||
Sbjct 421 GCTATCAAGCAGATTAAGACGCTGTTAAAGGATCGTTTGGATGGTAAAACAACTGGTACA 480
Query 481 AAAAATGGAGGAGGATCCAGTGAGAAGAAGAAATCTGAGCCTAGTGCCTCTGTCGAACTA 540
|||||| || || ||| | | |||||||||||||| |||||||| ||||||
Sbjct 481 AAAAAT------GG----AG-GAG--G-A-AAATCTGAGCCTAGCGCCTCTGTGGAACTA 525
Query 541 AACTCTAGCAACTTTGATGAGTTGGTCACTGAAAGCAAAGAACTTTGGATTGTGGAGTTT 600
|||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||
Sbjct 526 AACTCTAGCAACTTTGATGACTTGGTCGTTGAAAGCAAACAACTTTGGATTGTCGAGTTT 585
Query 601 TTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAAC 645
Query 661 AATTTGAAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATGCTGAGCAGTCGATAAAG 720
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGTTGCAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATGCTGAGCAGTCGATAAAG 705
Query 721 AGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTTCAGACAAAAGTAGC 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 706 AGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTGCAGACAAAAGTAGC 765
Query 781 CCAGTACCTTATGAGGGTGCTAGATCTGCATCAGCTATCGAATCTTTTGCTCTGGAACAG 840
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 766 CCAGTACCTTATGAGGGTGCTAGATCTGCATCAGCAATAGAATCTTTTGCTCTGGAACTG 825
Query 841 CTAGAATCCAATGCTGGTCCTGCTGAAGTAACTGAACTAACTGGGCCGGATGTCATGGAA 900
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 826 CTAGAATCCAATGCTGGACCTGTTGAAGTAACTGAACTAACTGGGCCGGATGTCATGGAA 885
Query 901 GATAAGTGTGGTTCTGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATTTTGGACTCA 960
|| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 886 GAGAAGTGTGGTCCCGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATTCTGGACTCA 945
Query 961 AAAGCTGAAGGAAGGAACAAGTATCTAGAGATGTTATTATCAGTTGCAGACAAGTTTAAG 1020
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 946 AAAGCTGAAGGAAGGAACAAGTATATAGAGATGTTATTATCAGTAGCAGACAAGTTTAAG 1005
Query 1021 AAAGACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAGCAACCTGATTTGGAGAAGCGT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AAAGACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAGCAACCTGATTTGGAGAAGCGT 1065
Query 1081 GTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCAAAGAAAGGAGCT 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1066 GTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCCAAGAAAGGAGCT 1125
Query 1141 TATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGATTTCGTTAAGGAGGCT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1126 TATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGATTTCGTAAAGGAAGCT 1185
Query 1201 GCGAAAGGAGGAAAAGGGAATTTGCCTATAGACGGAACTATGGAGATAGTGAAGACAGAA 1260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1186 GCGAAAGGAGGAAAAGGGAATTTGCCTATAGACGGAACAATGGAGATAGTGAAGACAGAA 1245
Query 1261 GCTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTCACTTGAAGACCTC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTCACTTGAAGACCTC 1305
Query 1321 ATGGGAAATGATGATGAAGCCTCCACTGAGTCCAAGGACGACTTGTGAACTTCTCTTTTA 1380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 ATGGGAAATGATGATGATGCCTCCACTGAGTCCAAGGACGACTTGTGAACTTCTCTTTTA 1365
Query 1381 CCTCATTGATAAGGGTTTTGGTTTCTTGAAAGACTTAAAGTGTCCCACTCAAGGACAATG 1440
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1366 CCTCATTGATAAGGGTTT-GGTTTCTTGAAAGACTTAACGTGTCCCACTCAAGGACAATG 1424
Query 1441 ATATCATTTCAAAGAGTTAGAACAGAG--TATACACTTTTAGATTCCAT 1487
||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1425 ATATCATTTTAAAGAGTTAGAACAGAGAGTATACACTTTTGGATTCCAT 1473
> Ahg482234 jgi|Araly1|482234|fgenesh2_kg.4__1294__AT2G32920.1
Length=1469
Score = 1181 bits (639), Expect = 0.0
Identities = 1081/1289 (84%), Gaps = 51/1289 (4%)
Strand=Plus/Plus
Query 69 TCTGTTG-TTTGCCTTGTTCGATCGCGGTAATGCTCTCTATGGATCTTCGTCGCCTGTGC 127
||| ||| |||| || ||||||| ||| | |||||| |||||||||||||| ||||||
Sbjct 91 TCT-TTGTTTTGGATTCTTCGATCTCGGCAGTGCTCTTTATGGATCTTCGTCACCTGTGG 149
Query 128 TTCAACTCACTCCTTCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGAGTCGTTTTGG 187
|||| |||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 150 TTCAGCTCACTGCTTCTAACTTCAAGTCCAAGGTTCTTAATTCAAATGGAGTTGTTTTGG 209
Query 188 TAGAGTTCTTTGCGCCATGGTGCGGTCATTGTC-AATCTCTAACACCAACTTGGGAGAAA 246
||||||||||||| |||||||| |||||||| | || |||||||||| || |||||||||
Sbjct 210 TAGAGTTCTTTGCACCATGGTGTGGTCATTG-CAAAGCTCTAACACCTACATGGGAGAAA 268
Query 247 GTTGCCAGTACTT-TGAAAGGTA-TTGCTACTGTGGCAGCCATTGATGCTGACGCTCACA 304
|| || | || || | ||||| | |||||||||||||||| ||||| || || ||||||
Sbjct 269 GTGGCTAATA-TTCTCAAAGG-AGTTGCTACTGTGGCAGCAATTGACGCAGATGCTCACC 326
Query 305 AGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTCGTTCCCG 364
|||||| | | |||||||||||| | | ||||||||||| ||||| || || ||||| |
Sbjct 327 AGTCTGCCGCGCAGGATTATGGTATCAAAGGTTTCCCAACTATTAAGGTCTTTGTTCCTG 386
Query 365 GGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAA-TTTGC- 422
| ||| ||||||||||||||||||||| ||| ||||||||||||||| || || |||||
Sbjct 387 GAAAGGCTCCAATTGATTACCAAGGAGAAAGAGATGCCAAATCCATTGCT-AATTTTGCT 445
Query 423 TATCAAGCAGATAAAGGCACTGTTAAAG-GATCGTTTGGATGGTAAAACAAGTGGCACAA 481
|| ||||||||| |||| || || || || |||||||| || || |||| | ||
Sbjct 446 TA-CAAGCAGATCAAGGGTCT-TTTGAGTGACCGTTTGGAAGG--CAA-AAGT---A-AA 496
Query 482 -AAAATGGAGGAGGATCCAGTGAGAAGAAGAAATCTGAGCCTAGTGCCTCTGTCGAACTA 540
|| |||||||||| || | ||| ||||||||||| |||||||| ||||| |||||
Sbjct 497 CCAACTGGAGGAGGA-GCAAAG-GAA-AAGAAATCTGAACCTAGTGCATCTGTGGAACTG 553
Query 541 AACTCTAGCAACTTTGATGAGTTGGTCACT-GAAAGCAAAGAACTTTGGATTGTGGAGTT 599
||| || | || |||||| ||||||||| | |||||||| ||||||||||| || |||||
Sbjct 554 AACGCTGGAAATTTTGATCAGTTGGTCA-TCGAAAGCAATGAACTTTGGATCGTTGAGTT 612
Query 600 TTTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAA 659
||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 613 TTTTGCACCTTGGTGTGGACACTGCAAAAAGCTTGCCCCGGAGTGGAAAAAGGCTGCAAA 672
Query 660 CAATTTGAAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATG-CTGAGCAGTCGATAA 718
|||||| |||| ||||| |||||||||||||||||||| |||| | |||||||||||||
Sbjct 673 AAATTTGCAGGGAAAGGTGAAACTAGGTCATGTCAATTGCGATGTC-GAGCAGTCGATAA 731
Query 719 AGAGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTTCAGACAAAAGTA 778
||||||||||||||||||||||||||| || || ||||| |||||| |||||||||| |
Sbjct 732 TGAGCAGATTCAAAGTGCAAGGATTCCCTACGATTTTGGTATTTGGTCCAGACAAAAGCA 791
Query 779 GCCCAGTA-CCTTATGAGGGTGCTAGATCTGCATCAGCTATCGAATCTTTTGC-TCTGGA 836
| ||| || |||||||||||||| || ||||| ||||| || ||||||||||| |||| |
Sbjct 792 GTCCA-TATCCTTATGAGGGTGCCAGGTCTGCGTCAGCGATAGAATCTTTTGCGTCTG-A 849
Query 837 ACA-GCTAGAATCCAATGCTGGTCCTGCTGAAGTAACTGAACTAACTGGGCCGGATGTCA 895
|| | | ||||||| |||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 850 ACTTG-TGGAATCCAGTGCTGGCCCTGTTGAAGTAACCGAACTAACTGGGCCGGATGTCA 908
Query 896 TGGAAGATAAGTGTGGTTCTGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATT-TTG 954
||||| | ||||||||||||||||||||||| ||| | |||||||||||||||||| |||
Sbjct 909 TGGAAAAGAAGTGTGGTTCTGCTGCTATTTGCTTTATCTCTTTCTTACCTGACATTCTTG 968
Query 955 GACTCAAAAGCTGAAGGAAGGAACAAGTATCTAGAGATGTTATTATCAGTTGCAGACAAG 1014
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 969 -ACTCCAAAGCTGAAGGAAGGAACAAGTACCTCGAGATGTTATTATCAGTTGCAGAGAAG 1027
Query 1015 TTTAAGAAAG-ACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAG-CAACCTGATTTGG 1072
|||||||| | | |||||| | ||| |||||||||| || || || ||||| |||||||
Sbjct 1028 TTTAAGAA-GCATCCTTACAGTTTTATGTGGGTGGCGGC-GGTAACTCAACCGGATTTGG 1085
Query 1073 AGAAGCGTGTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCAAAGA 1132
||||||| ||| ||| || ||||| ||||||||||||||||||||| | || | ||||
Sbjct 1086 AGAAGCGAGTTAATGTGGGGGGATACGGTTATCCAGCAATGGTAGCCATGAATGTGAAGA 1145
Query 1133 AAGGAGCT-TATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGA-TTTCGT 1190
|||||| | |||||||| |||||||||| |||||| || |||||||| ||| ||| ||
Sbjct 1146 AAGGAG-TATATGCTCCTCTTAAAAGCGCCTTTGAGCTTCAACACCTCTTAGAATTT-GT 1203
Query 1191 TAAGGAGGCTGCGAAAGGAGGAAAAGGGAATTTGCCTATAGAC-GGAACTATG-GAGATA 1248
|| || |||| || || || ||||| ||| |||| || || ||||| | |||||
Sbjct 1204 CAAAGATGCTGGGACCGGTGGGAAAGGAAATGTGCCAAT-GAATGGAAC-ACCAGAGATC 1261
Query 1249 GTGAAGACAGAAG-CTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTC 1307
||||||||| ||| | ||||||||||||||||||||| || |||| | ||||||||||||
Sbjct 1262 GTGAAGACA-AAGGCATGGGATGGTAAAGATGGAGAGCTGATTGAGGAAGATGAATTCTC 1320
Query 1308 ACTTGAAGACCTCATGGGAAATGATGATG 1336
|||||| || ||||||||| ||||||||
Sbjct 1321 ACTTGATGAACTCATGGGAGGTGATGATG 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5