BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04985.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910174 jgi|Araly1|910174|Al_scaffold_0001_428 966 0.0
> Ahg910174 jgi|Araly1|910174|Al_scaffold_0001_428
Length=582
Score = 966 bits (523), Expect = 0.0
Identities = 560/578 (97%), Gaps = 1/578 (0%)
Strand=Plus/Plus
Query 192 ATGAATCGGCTGAGAGGCCGAGGTACACCGATTCTGGGTTCCGCACTCGTGCCTCAGCTG 251
|||||||||||||||||||||||| || || |||||||||| ||| | ||||||||||||
Sbjct 1 ATGAATCGGCTGAGAGGCCGAGGTGCATCGCTTCTGGGTTCGGCAGTTGTGCCTCAGCTG 60
Query 252 AAGAAAAAAGCCCTAAATTCATTGGTCGCCGTCCAGGATTCATATCTATCCACCAAGGAC 311
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 AAGAAAAAAGCCCTTAATTCATTGGTCGCCGTCCAGGATTCGTATCTCTCCACCAAGGAC 120
Query 312 TTGTTCGAGAGGCACAGGGTCGTGTTTACAGTTGGAACTTCTATAGCATCTGTTGCTACG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGTTCGAGAGGCACAGGGTCGTGTTTACAGTTGGAACTTCTATAGCATCTGTTGCTACG 180
Query 372 GCTTGGATTGGTTACTCATTACGACATTACAATGAAACTAGAATTAATCAGAGGCTGGAG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTGGATTGGTTACTCATTACGACATTACAATGAAACTAGAATTAATCAGAGGCTGGAG 240
Query 432 TCCATTGAGAATGCGATGAAAAACACCCAAGAGTTAGAACGAGGAGAACTGAAGAAGCTC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATTGAGAATGCGATGAAAAACACCCAAGAGTTAGAACGAGGAGAACTGAAGAAGCTC 300
Query 492 GTTGATCCAGTCGGTTCCAGGTTCACTACAACAATTGCCACAGCGGGAACCACTTTGATC 551
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 301 GTTGATCCAGTCGGTTCCAGGTTCACTACAACAATTGCAACCGCTGGAACCACTTTGATC 360
Query 552 CTCGGGTATGGGTTGGGTTGGCGAGGCGGGATATGGTATGCAAATAGGAAGTTTAGAAGG 611
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGGGTATGGTTTGGGTTGGCGAGGCGGGATATGGTATGCAAATAGGAAGTTTAGAAGG 420
Query 612 GAGCAAATGAGATTGGCCGGGCAGTTAAAACCGAGAGAATGGAAGTTACTAGGGAGGATA 671
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 421 GAGCAAATGAGATTGGCCGGGCAGTTAAAACCGAGAGAATGGAAGTTATTAGGAAGGATA 480
Query 672 AAACCTCGAGCTTGGCCAACAACAAAGTTTCTCAGACGACCATTCCCAAGACAGAACAAA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACCTCGAGCTTGGCCAACAACAAAGTTTCTCAGACGACCATTCCCAAGACAGAACAAA 540
Query 732 ACAACAGAAAATGCTTTGAAGGCACCAGAATGTG-GAG 768
||| |||||||||||||||||||||||||| ||| |||
Sbjct 541 ACAGCAGAAAATGCTTTGAAGGCACCAGAAAGTGCGAG 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5