BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04990.2
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429 1877 0.0
> Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429
Length=1236
Score = 1877 bits (1016), Expect = 0.0
Identities = 1125/1178 (96%), Gaps = 5/1178 (0%)
Strand=Plus/Plus
Query 186 ATGCGAACCCCCATGTCAGACACTCAGCATGTACAGAGCTCTTTGGTGTCGATTCGATCT 245
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGCGACCCCCCATGTCAGACACTCAGCATGTACAGAGCTCCATGGTGTCGATTCGATCT 60
Query 246 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGACCGGCGTGGAGGAA 305
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 61 TCCGACAAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATGAGAACGGCGGGGAGGAA 120
Query 306 CT-GAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 364
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 -TCGAATCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATTTAAGAACTGG 179
Query 365 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCTGTGGCTATGGAAGCAGTTGCCGTTACAATCATCCTACTCATCTTCCACAGGATGT 239
Query 425 TGCTTATTACAAGGAGGAGCTCCCTGAGAGAATTGGACAGCCGGATTGTGAGTATTTTCT 484
| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 240 TTCTTATCACAAGGAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299
Query 485 GAAGACAGGAGCTTGTAAGTACGGCCCAACTTGTAAATATCATCATCCAAAGGACAGGAA 544
||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCCAAAGGATAGGAA 359
Query 545 CGGTGCACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCTGGGTGAGAAGCC 604
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 CGGTGTACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAGCC 419
Query 605 ATGTCCATATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 664
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGTCCCTATTACCTGCGAACGGGAACTTGCAGATTCGGAGTTGCTTGCAAATTCCACCA 479
Query 665 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTGCTGCA-G 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 480 TCCTCAACCTGATAATGGACATTCTACTGCATATGGAATGTCTAGCTTTCCTTCTGCAAG 539
Query 724 ATTTACGATATGCTAGTGGTTTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 783
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 -TTTACAATATGCTAATGGATTAACAATGATGTCTACATATGGAACTTTGCCTCGTCCGC 598
Query 784 AAGTTCCCCAGTCCTATGTGCCAATCCTGGTTTCACCCTCTCAAGGCTTTTTACCTCCTC 843
||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 599 AAGTTCCTCAGTCCTACGTGCCAATCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTC 658
Query 844 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGAATCAACCTT 903
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 AAGGCTGGGCCCCTTACATGGCTGCATCTAACTCCATGTACAATGTGAAGATTCAACCTT 718
Query 904 ATTACTCCGGTAGTAGTGCATCCATGGCCATGGCTGTGGCATTGAACCGTGGTTTGTCAG 963
||||||| ||| ||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 719 ATTACTCGGGTTCTAGTGCACCCATAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAG 778
Query 964 AAAGTTCTGACCAACCAGAATGTCGGTTTTTTATGAACACCGGGACATGTAAATACGGAG 1023
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 AAAGTTCTGAACAACCAGAATGTCGGTTTTTTATGAACACTGGGACATGTAAATACGGAG 838
Query 1024 ACGATTGCAAATACAGCCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 1083
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACGATTGCAAATACAATCATCCCGGAGTAAGGATTTCACAACCACCACCAAGTCTTATAA 898
Query 1084 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACCCTTTTGTTCTTCCAGCGAGACCTGGACAACCAGCTTGTGGTAACTTCAGGTCTTATG 958
Query 1144 GATTCTGCAAGTTTGGACCAAACTGCAAATTCGACCACCCTATGCTGCCATATCCGGGCC 1203
||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 959 GATTCTGCAAGTTCGGAACAAACTGCAAATTCGACCACCCGATGCTGCCATATCAGGGCC 1018
Query 1204 TGACCATGGCTACTTCTCTGCCTACTCCTTTTGCTTCACCTGTTACAACCCATCAGAGGA 1263
|| |||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1019 TGGCCATAGCTTCTTCTCTGCCTACTCCTTATGCTTCACCTGTTTCAACCCATCAGAGGA 1078
Query 1264 TCTCACCAACACCAAACCGCTCTGATTCAAAGTCTCTTTCTAATGGTAAACCTGATGTGA 1323
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1079 TCTCACCATCGCCAAACCGCTCTGATTCGAAGTCTCTTTCTAATGGTAAACCTGACGTGA 1138
Query 1324 AGAAAGAAAGCTCAGAGACTGAGAAACCAGACAATGGA 1361
|||| ||||||||||||||||||||||||||||| |||
Sbjct 1139 AGAAGGAAAGCTCAGAGACTGAGAAACCAGACAA-GGA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5