BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05000.2
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470491 jgi|Araly1|470491|fgenesh2_kg.1__445__AT1G05000.1 865 0.0
Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1 518 5e-146
> Ahg470491 jgi|Araly1|470491|fgenesh2_kg.1__445__AT1G05000.1
Length=1087
Score = 865 bits (468), Expect = 0.0
Identities = 614/680 (90%), Gaps = 28/680 (4%)
Strand=Plus/Plus
Query 515 GGAGCCATTTGTGAATATTCCAGACCATAAAATCCGCATGGCACTGAAAGTGCTTCTAGA 574
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 426 GGAGCCATTTGTGAATATTCCTGACCGTAAAATCCGCATGGCACTTAAAGTGCTTCTAGA 485
Query 575 TGAGAAAAACCATCCTGTTCTGATTCATTGTAAGCGAGGCAAGCATCGGACCGGTTGTCT 634
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 486 TGAGAAAAACCATCCTGTTCTGATTCACTGTAAGCGAGGGAAGCATCGGACTGGTTGTCT 545
Query 635 TGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCA 694
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 546 TGTTGGTTGCTTGAGAAAGCTCCAAAAATGGTGTTTGACATCGATATTCGACGAGTACCA 605
Query 695 ACGATTTGCAGCAGCGAAAGCTAGAGTTTCAGATCAAAGATTCATGGAGATATTCGATGT 754
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 606 GCGATTCGCAGCAGCGAAAGCTAGAGTTTCAGATCAAAGATTCATGGAAACATTCGATGT 665
Query 755 TTCCAGCTTCAGTCATATTCCAATGTCATTCTCTTGTTCCATCAGGTAAACAGGGGAAGC 814
||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 666 TTCCAGCTTCAATCATATTCCAATGTCTTTCTCCTGTTCCATCAGATAAACAGGGGAAGC 725
Query 815 TAAAATCTTCAGATAAAAAGGAGAGATTAATCATATTAGAGTTCCAGAGGAAACATTCTT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TAAAATCTTCAGATAAAAAGGAGAGATTAATCATATTAGAGTTCCAGAGGAAACATTCTT 785
Query 875 CTCTTTCTTTACCTTTCTCTGGAATCAATAATACTATTTCGAGAAAAGAAAAGGTTTTCG 934
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 786 CTCTTTCTTTACCTTTCTCTGGAATCAATAATAATATTTCGAGAAAAGAAAAGGTTTAC- 844
Query 935 TTGTTATAATGACTTCACTCTGtttttttACTGCTCAGTGTAAGCA-TAAAGGTAGATAA 993
|| | | || | | |||||||| |||||||||||||||| ||| |||||||||
Sbjct 845 TT-T-A------CT-C--T--GTTTTTTTCCTGCTCAGTGTAAGCACTAA-GGTAGATAA 890
Query 994 TTACGTATATATATA-AAGTAAACTATACAGGAGTTTGTTTAGGAATATATGTATTTTCT 1052
|||||||| | ||| ||||||| |||| ||||||||||||||||| |||| ||||||||
Sbjct 891 ATACGTATACAAATACAAGTAAATTATATAGGAGTTTGTTTAGGAAGATATATATTTTCT 950
Query 1053 TGGGTTATCCCGAATGTTGCTTAACGATTATTA---GCTCATATATTTCAATTCTTCAGA 1109
||| ||||||| |||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 951 TGGATTATCCCAAATGTTGCATAACGATTATTACTTGCTCATATATTTCATTTCTTCAGT 1010
Query 1110 ACATGATTTGTTATTATCGTGTGTAGAGGA-A-AATGCTA-CTACCATCAGTGTGTAAA- 1165
|||| ||||||||| ||| | | | |||| | ||| || ||||||||||||||||||
Sbjct 1011 ACATAATTTGTTATCATCAAGAGCA-AGGAGATAAT--TAACTACCATCAGTGTGTAAAA 1067
Query 1166 -TAATTTGTTCAATGTAATG 1184
||||||||||| |||||||
Sbjct 1068 ATAATTTGTTCATTGTAATG 1087
Score = 584 bits (316), Expect = 4e-166
Identities = 388/422 (92%), Gaps = 7/422 (2%)
Strand=Plus/Plus
Query 1 CCATTACTCGACTCTCCTCACCTAAAGATTCAACCTTTTCTCTGTTTCCCAATTCAGAGA 60
|||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||| |
Sbjct 9 CCATTACTTGACTCTCCTCACCAAAAGATTCAACC-TTTCTCTGATTCCCAGTTCAGATA 67
Query 61 TGAAGCTTGTGGAGAAGACGACTACTACAGAGCAGGAC---AATGGAGAAGATTTCTGCC 117
||||||||||||||||||||| | |||| ||| ||||| |||||||||||| |||| |
Sbjct 68 TGAAGCTTGTGGAGAAGACGATTGCTACGGAGGAGGACGATAATGGAGAAGATGTCTGTC 127
Query 118 GCACCATCATCGAGGTTTCCGAGGTTAACAGAAACGTGTTTCAGGCTCCGGGCGGTGAAG 177
||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 128 GCA-C--CATCGAGGTTTCCGAGGTTGGCAGAAACGGGTTTCAGGCTCCGGACGGTGAAG 184
Query 178 CTGATCCCTTTCGAGTTGTCTCCGGCGAAGAACTTCACCTAATTCCGCCGCTCAACTTCT 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 185 CTGATCCCTTTCGAGTTGTCTCCGGCGAAGAACTTAACCTAATTCCGCCGCTCAACTTCT 244
Query 238 CCATGGTCGATAACGGTATATTCCGGTCTGGATTCCCTGATTCAGCTAACTTCTCCTTTC 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 245 CCATGGTCGATAACGGTATATTCCGGTCTGGATTTCCTGATTCAGCTAACTTCTCCTTTC 304
Query 298 TCCAGACTCTCGGTCTCCGCTCAATCATATACTTGTGCCCGGAGCCCTACCCAGAGAGCA 357
||||||||||||| ||||||||||||||||||||||| |||||||| ||| | || ||||
Sbjct 305 TCCAGACTCTCGGCCTCCGCTCAATCATATACTTGTGTCCGGAGCCTTACACTGAAAGCA 364
Query 358 ATCTCCAGTTCCTTAAATCCAATGGAATCAGGCTTTTCCAGTTTGGTATTGAAGGCAACA 417
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 365 ATCTCCAGTTCCTTAAATCCAATGGAATTAGGCTTTTTCAGTTTGGCATTGAAGGCAATA 424
Query 418 AG 419
||
Sbjct 425 AG 426
> Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1
Length=1056
Score = 518 bits (280), Expect = 5e-146
Identities = 519/629 (83%), Gaps = 38/629 (6%)
Strand=Plus/Plus
Query 198 TCCGGCGAAGAACTTCACCTAATTCCGCCGCTCAACTTCT-CCATGGTCGATAACGGTAT 256
|||||||| |||||| |||| ||||| ||| | ||||| | | || || ||||| |||||
Sbjct 324 TCCGGCGACGAACTTAACCTGATTCCACCGTTGAACTT-TGCGATTGTTGATAATGGTAT 382
Query 257 ATTCCGGTCTGGATTCCCTGA-TTCAGCTAACTTCTCCTTTC-TCCAGACTCTCGGTCTC 314
|||||||||||||||||| || || ||| ||||||||| ||| || ||||||| || ||
Sbjct 383 ATTCCGGTCTGGATTCCCGGACTT-AGCGAACTTCTCC-TTCATCAAGACTCTTGGCCTT 440
Query 315 CGCTCAATCATATAC-TTGTGCCCGGAGCCCTACCCAGAGAGCAATC-TCCAGTTCCTTA 372
||||||||||||| | ||||| || ||||| || || |||| ||| | | |||||||| |
Sbjct 441 CGCTCAATCATAT-CTTTGTGTCCAGAGCCATATCCTGAGAACAA-CATGCAGTTCCTCA 498
Query 373 AATCCAATGGAATCAGGCTTTTCCAGTTTGGTATTGAAGG---CAA---CAAGTGTGTTC 426
||||||||||||| || ||||| |||||||| |||||||| ||| ||||||| | |
Sbjct 499 AATCCAATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCCAAGTCCAAGTGTCTCC 558
Query 427 CTGACTTAGACAACGAGATTTCCTTGCAT-TTATGGAATTCTAAGCATCAGAAACAGGGT 485
| | ||||| |||||| ||| |||||| || |||| |||||||||||||||| |||||
Sbjct 559 CCGGGTTAGAGAACGAGGTTTGGTTGCATATT-TGGAGTTCTAAGCATCAGAAAGAGGGT 617
Query 486 CCCTTA-ACTAATGGACTTTCGAAAACTTTGGAGCCATTTGTGA-ATATTCC-AGACCAT 542
|| || || |||||| ||||||||||| ||||||||| || | ||| ||| ||| |||
Sbjct 618 TCC-TATACAAATGGAAATTCGAAAACTTCGGAGCCATTAGT-AGATA-TCCTAGATCAT 674
Query 543 AAAATCCGCATG--GCACTGAAAGTGCTTCTAGATGAGAAAAACCATCCTGTTCTGATTC 600
|||||||| || ||||| ||||| ||||| |||||||| |||||||| || ||||||
Sbjct 675 AAAATCCG--TGAAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTC 732
Query 601 ATTGTAAGCGAGGCAAGCATC-GGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAG 659
|||| || ||||||||||| | ||||||| ||||||||||| ||| ||||||| ||||||
Sbjct 733 ATTGCAAACGAGGCAAGCA-CAGGACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAG 791
Query 660 AAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTAGA 719
|||||||| | ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 792 AAATGGTGCATAACATCGATATTCGACGAGTACCAACGATTTGCAGCGGCTAAAGCTAGA 851
Query 720 GTTTCAGATCAAAGATTCATGGAGAT-ATTCGATGTTTCCAG-CTTCA-GTCATATTCCA 776
||||| || ||||| ||||||||| | ||||||||| || || ||| | | || ||||||
Sbjct 852 GTTTCGGACCAAAGGTTCATGGAG-TCATTCGATGTATC-AGGCTTGAAG-CACATTCCA 908
Query 777 ATGTCATTCTCTTGTTCCA-TCAGGTAAA 804
||||| |||||||| |||| | |||||||
Sbjct 909 ATGTCTTTCTCTTGCTCCAAT-AGGTAAA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5