BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05010.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919192 jgi|Araly1|919192|scaffold_100473.1 1661 0.0
> Ahg919192 jgi|Araly1|919192|scaffold_100473.1
Length=1012
Score = 1661 bits (899), Expect = 0.0
Identities = 968/1002 (97%), Gaps = 1/1002 (0%)
Strand=Plus/Plus
Query 155 gagagagagatggagagtttcccgatcatcaatctcgagaagcttaatggagaagagaga 214
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 12 GAGAGAGAGATGGAGAGTTTCCCGATCATCAGTCTCGAGAAGCTTAATGGAGAAGAGAGA 71
Query 215 gCAATCACTATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 274
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GCAATCACGATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 131
Query 275 AACCATGGGATTTCACTCGAGCTTTTGGACAAAGTGGAGAAGATGACCAAGGAACATTAC 334
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 132 AACCATGGGATTTCACACGAGCTTTTGGACAAAGTGGAGAAGATGACGAAGGAACACTAC 191
Query 335 AAGAAGTGCATGGAAGAGAGATTCAAGGAATCGATTAAGAACAGAGGTCTTGACTCTCTT 394
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 192 AAGAAGTGCATGGAAGAAAGATTCAAGGAATCGATCAAGAACAGAGGACTTGACTCTCTT 251
Query 395 CGCTCTGAAGTCAACGACGTTGACTGGGAATCCACTTTCTACCTCAAGCACCTTCCCGTC 454
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 252 CGCTCTGAAGTCAACGACGTTGACTGGGAATCAACTTTCTACCTCAAGCACCTTCCCGTC 311
Query 455 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACAGAACGTTAATGAAAGACTTC 514
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct 312 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACCGGACGTTGATGAAAGAGTTC 371
Query 515 GCCGGAAAGATAGAGAAGTTGTCGGAGGAGCTACTGGATCTGCTGTGCGAGAATCTCGGT 574
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 372 GCCGGAAAGATAGAGAAGTTATCGGAGGAGCTATTGGATCTGCTGTGCGAGAATCTCGGT 431
Query 575 TTAGAGAAGGGTTATTTAAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 634
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTAGAGAAGGGTTATCTGAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 491
Query 635 AAAGTCAGCAATTATCCACCTTGTCCTAATCCGGACCTAGTCAAGGGTCTCCGAGCCCAC 694
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 492 AAAGTCAGCAATTATCCACCTTGTCCTAAACCGGACCTAGTCAAGGGTCTCCGAGCCCAC 551
Query 695 ACCGACGCCGGCGGCATCATCCTCCTCTTCCAAGACGACAAAGTCAGTGGACTTCAGCTT 754
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 552 ACCGACGCCGGTGGCATCATCCTCCTCTTCCAAGATGACAAAGTCAGTGGACTTCAGCTT 611
Query 755 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 671
Query 815 GGCGATCAACTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACATAGAGTGCTA 874
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 672 GGTGATCAGCTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACACAGAGTGATA 731
Query 875 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTATAATCCGGGAAGCGAC 934
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 732 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTACAATCCGGGAAGCGAC 791
Query 935 TCTGTTATTTTTCCGGCGCCGGAGCTGATCGGAAAAGAAGCAGAGAAGGAGAAGAAAGAG 994
||||||||||||||||| |||||| |||||||||||||| | ||||||||| ||||||||
Sbjct 792 TCTGTTATTTTTCCGGCACCGGAGTTGATCGGAAAAGAACCGGAGAAGGAGGAGAAAGAG 851
Query 995 AACTATCCGAGATTTGTGTTTGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 1054
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 852 AACTATCCGAGATTTGTGTTCGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 911
Query 1055 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 971
Query 1115 GGACCATTGGCCACTGCGTGAATGATATGTAACTGGTTAATA 1156
||||||||||||||||||||||||| |||||||| ||||||
Sbjct 972 GGACCATTGGCCACTGCGTGAATGA-ATGTAACTTATTAATA 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5