BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05020.1
Length=2414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919193 jgi|Araly1|919193|scaffold_100474.1 2422 0.0
> Ahg919193 jgi|Araly1|919193|scaffold_100474.1
Length=1974
Score = 2422 bits (1311), Expect = 0.0
Identities = 1420/1473 (96%), Gaps = 6/1473 (0%)
Strand=Plus/Plus
Query 302 AAAAGCGCGACGACGAGGACAATGCCGAGCAAGCTTAAAAAAGCGATTGGTGCGGTTAAA 361
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 AAAAG-GCGACGACGAGGACAATGCCGAGCAAGCTGAAAAAAGCGATTGGTGCGGTTAAA 61
Query 362 GATCAGACAAGCATTAGCCTCGCCAAAGTTGCTAACGGAGCCACCGGAGGCGGCGATCTC 421
||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 GATCAAACGAGCATTAGCTTCGCCAAAGTCGCTAACGGAGCCACCGGAGGCGGCGATCTC 121
Query 422 ACGACTCTCGAAGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 481
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACCACTCTCGAGGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 181
Query 482 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 241
Query 542 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGTACACGGAATTGGATCGTCGCGCTCAAA 601
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 242 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGGACTCGGAATTGGATCGTCGCGCTCAAA 301
Query 602 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 361
Query 662 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 421
Query 722 AACTCGTGCCCTTGGGATTTCACTGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 781
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 422 AACTCTTGCCCTTGGGATTTCACAGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 481
Query 782 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAAACCGAGAACAAACC 841
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 482 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAATCCGAGACCAAACC 541
Query 842 GGAAGAATCAGCACCAACTCAAC-AAC--AAGATCCCGGTTTAATCCCAAAGCCGGAATT 898
|||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||
Sbjct 542 GGAAGAATCAGCACCAACACAACCAACTCAAGATCCCGGTTTAATCCCAAAACCGGAATA 601
Query 899 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 661
Query 959 TATTGGCAAAAATTACTAGACAGAGCAATCGCGACGCGGCCGACGGGAGACGCGAAAGCC 1018
|||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 662 TATTGGCAAAGATTACTAGACAGAGCAATCGCGACGCGGCCAACGGGAGATGCAAAAGCG 721
Query 1019 AACAGGCTCGTGAAAATGTCGCTTTACGCCGTCATGCAAGAGAGTTTTGATCTTTACAGA 1078
|||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 722 AACAAGCTCGTGAAAATGTCGCTATACGCCGTCATGCAAGAGACTTTTGATCTTTACAGA 781
Query 1079 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATCTGCAATACCAATCT 1138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATTTGCAATACCAATCT 841
Query 1139 TGCAT-CAATGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGC 1197
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGCATTCA-TGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGG 900
Query 1198 ATTCTACGATCTTTCCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 1257
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATTCTACGATATTTGCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 960
Query 1258 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTTTAAAAGATCAATCGTCGTT 1317
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 961 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTCTGAAAGATCAATCGTCGTT 1020
Query 1318 TCCAGCGAGCTCAGGGTTGTATCCGTCACCGAATAGTTTTCTTCCTCCGCCTCCATCGTC 1377
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 TCCAGCGAGCTCGGGGTTGTATCCGTCACCGAATAGTCTTCTTCCTCCGCCTCCATCGTC 1080
Query 1378 CAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGGGATTCCACGATTGATACGTCGGA 1437
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 TAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGAGATTCCACGATTGATACGTCGGA 1140
Query 1438 GAGGTATTCAGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1497
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGGTATTCGGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1200
Query 1498 TGAAGCAGGGACTAGTAGTCCTCCAATGTCTTGTCATTCTGAGCCATACGGAGGAGGACG 1557
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1201 TGAAGCAGGGACTAGTAGTCCTCCGATGTCTTGTCATTCTGAGCCTTATGGAGGAGGACG 1260
Query 1558 AGATGATCCTAATGGGAATAATTTTGATACGGTTTCGACTAAATCGCTTCCCAATAATCC 1617
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1261 AGATGATCCTAATGGAAATAATTTCGATACGGTTTCGACTAAATCGCTTCCGAATAATCC 1320
Query 1618 CTCTGTTTCTGCTTCCAATCTCATATTAGACCTATTGTCATTGGATGACGTAAGTAACAC 1677
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 1321 CTCTGTTTCTGCTTCCAATCTCACATTGGACCTATTGTCCTTGGATGACGTAAGTAACAC 1380
Query 1678 GGCAGAAGCAGAAGATGTTGAAGACAAGAAGAAGCAAGACGATTCAAAGGCAGAGACTTT 1737
|||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1381 GGCAGAAGCAAAAGATGTTGAAGACAAGAAGAAGCAAGATGATTCTAAGGCAGAGACTTT 1440
Query 1738 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1770
|||||||||||||||||||||||||||||||||
Sbjct 1441 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1473
Score = 723 bits (391), Expect = 0.0
Identities = 477/517 (92%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 1794 TTGAG-GAGGAACCTTCAACCGCTGAGGACCATCAGAGAGATTCAGGGAATTGGTTGCTT 1852
||||| || |||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1463 TTGAGAGATGAACCTTCAACCTCTGAGG---ATCAAAGAGATTCAGGGAATTGGTTGCTT 1519
Query 1853 GCGTTAGAAGAAACTGCTACGCAGGTGCAGGGTAATAACTCGATGGCGATAGTACCGTTC 1912
| | | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1520 GTGCTGGAAGAAACCGCTACGCAGGTGCAGGATAATAACTCGATGGCGATAGTACCGTTC 1579
Query 1913 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCACGGACCAATACAACCCATTCTTG 1972
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1580 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCATGGACCAATACAATCCATTCTTG 1639
Query 1973 GAAGAACCAGTTGC-GCAGTTAGCTACAGCCGGAG-AACCAATGATCACGTTCGGTGGCT 2030
|||||||||||||| | |||||||| |||||| || ||||||||| ||||||| ||| ||
Sbjct 1640 GAAGAACCAGTTGCAG-AGTTAGCTGCAGCCG-AGGAACCAATGACCACGTTCAGTGTCT 1697
Query 2031 TGGCTTTGACAGGGTTTCAGCCAGAACCGACATTTCAGGTGAACGTTCCTGATGATTTTG 2090
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1698 TGGCTTTGACAGAGTTTCAGCCAGAACCGACGTTTCAGGTGAACGTTCCTGAAGATTTTG 1757
Query 2091 AGCCGTCTTCTACACCAACATTTAAGGCCACGGAGACTTTGCCTATGAAATGTGACCCGT 2150
||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||| |
Sbjct 1758 AGCCGTCTTCTACACCAACGTTTAAGGCCACGGGGACTTTGCCTGTGGAATGTGACCCAT 1817
Query 2151 TTACAACATTTGAGAGT--TTT-GGGTTCGGAGAGACATTTTCAGAAAATGGAGGGGTAA 2207
||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1818 TTACAACATTTGAGAGTACTTTTGGGTTCGGAGAGACATTATCAGAAAATGGAGGGGTAA 1877
Query 2208 ATCAGCAATCTGTATTGCAAGAACAGCAGATATGGTTGCAGAACCAGAAAAAGATCATAG 2267
||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1878 GTCAACAATCTGTGTTGCAAGAACAGCAGTTATGGTTGCAGAACCAGAAAAAGATCATAG 1937
Query 2268 CCAAGCACTTGAGTTGATACAAAATTTATTTGGCTAG 2304
||||||||||||||||||| |||| ||||||||||||
Sbjct 1938 CCAAGCACTTGAGTTGATAAAAAAATTATTTGGCTAG 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90959505060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5