BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05020.1 Length=2414 Score E Sequences producing significant alignments: (Bits) Value Ahg919193 jgi|Araly1|919193|scaffold_100474.1 2422 0.0 > Ahg919193 jgi|Araly1|919193|scaffold_100474.1 Length=1974 Score = 2422 bits (1311), Expect = 0.0 Identities = 1420/1473 (96%), Gaps = 6/1473 (0%) Strand=Plus/Plus Query 302 AAAAGCGCGACGACGAGGACAATGCCGAGCAAGCTTAAAAAAGCGATTGGTGCGGTTAAA 361 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3 AAAAG-GCGACGACGAGGACAATGCCGAGCAAGCTGAAAAAAGCGATTGGTGCGGTTAAA 61 Query 362 GATCAGACAAGCATTAGCCTCGCCAAAGTTGCTAACGGAGCCACCGGAGGCGGCGATCTC 421 ||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 62 GATCAAACGAGCATTAGCTTCGCCAAAGTCGCTAACGGAGCCACCGGAGGCGGCGATCTC 121 Query 422 ACGACTCTCGAAGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 481 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 ACCACTCTCGAGGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 181 Query 482 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 241 Query 542 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGTACACGGAATTGGATCGTCGCGCTCAAA 601 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 242 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGGACTCGGAATTGGATCGTCGCGCTCAAA 301 Query 602 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 361 Query 662 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 421 Query 722 AACTCGTGCCCTTGGGATTTCACTGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 781 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 422 AACTCTTGCCCTTGGGATTTCACAGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 481 Query 782 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAAACCGAGAACAAACC 841 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 482 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAATCCGAGACCAAACC 541 Query 842 GGAAGAATCAGCACCAACTCAAC-AAC--AAGATCCCGGTTTAATCCCAAAGCCGGAATT 898 |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||| Sbjct 542 GGAAGAATCAGCACCAACACAACCAACTCAAGATCCCGGTTTAATCCCAAAACCGGAATA 601 Query 899 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 661 Query 959 TATTGGCAAAAATTACTAGACAGAGCAATCGCGACGCGGCCGACGGGAGACGCGAAAGCC 1018 |||||||||| |||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 662 TATTGGCAAAGATTACTAGACAGAGCAATCGCGACGCGGCCAACGGGAGATGCAAAAGCG 721 Query 1019 AACAGGCTCGTGAAAATGTCGCTTTACGCCGTCATGCAAGAGAGTTTTGATCTTTACAGA 1078 |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 722 AACAAGCTCGTGAAAATGTCGCTATACGCCGTCATGCAAGAGACTTTTGATCTTTACAGA 781 Query 1079 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATCTGCAATACCAATCT 1138 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 782 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATTTGCAATACCAATCT 841 Query 1139 TGCAT-CAATGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGC 1197 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 TGCATTCA-TGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGG 900 Query 1198 ATTCTACGATCTTTCCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 1257 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATTCTACGATATTTGCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 960 Query 1258 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTTTAAAAGATCAATCGTCGTT 1317 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 961 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTCTGAAAGATCAATCGTCGTT 1020 Query 1318 TCCAGCGAGCTCAGGGTTGTATCCGTCACCGAATAGTTTTCTTCCTCCGCCTCCATCGTC 1377 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1021 TCCAGCGAGCTCGGGGTTGTATCCGTCACCGAATAGTCTTCTTCCTCCGCCTCCATCGTC 1080 Query 1378 CAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGGGATTCCACGATTGATACGTCGGA 1437 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1081 TAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGAGATTCCACGATTGATACGTCGGA 1140 Query 1438 GAGGTATTCAGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1497 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GAGGTATTCGGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1200 Query 1498 TGAAGCAGGGACTAGTAGTCCTCCAATGTCTTGTCATTCTGAGCCATACGGAGGAGGACG 1557 |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 1201 TGAAGCAGGGACTAGTAGTCCTCCGATGTCTTGTCATTCTGAGCCTTATGGAGGAGGACG 1260 Query 1558 AGATGATCCTAATGGGAATAATTTTGATACGGTTTCGACTAAATCGCTTCCCAATAATCC 1617 ||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1261 AGATGATCCTAATGGAAATAATTTCGATACGGTTTCGACTAAATCGCTTCCGAATAATCC 1320 Query 1618 CTCTGTTTCTGCTTCCAATCTCATATTAGACCTATTGTCATTGGATGACGTAAGTAACAC 1677 ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| Sbjct 1321 CTCTGTTTCTGCTTCCAATCTCACATTGGACCTATTGTCCTTGGATGACGTAAGTAACAC 1380 Query 1678 GGCAGAAGCAGAAGATGTTGAAGACAAGAAGAAGCAAGACGATTCAAAGGCAGAGACTTT 1737 |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1381 GGCAGAAGCAAAAGATGTTGAAGACAAGAAGAAGCAAGATGATTCTAAGGCAGAGACTTT 1440 Query 1738 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1770 ||||||||||||||||||||||||||||||||| Sbjct 1441 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1473 Score = 723 bits (391), Expect = 0.0 Identities = 477/517 (92%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 1794 TTGAG-GAGGAACCTTCAACCGCTGAGGACCATCAGAGAGATTCAGGGAATTGGTTGCTT 1852 ||||| || |||||||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 1463 TTGAGAGATGAACCTTCAACCTCTGAGG---ATCAAAGAGATTCAGGGAATTGGTTGCTT 1519 Query 1853 GCGTTAGAAGAAACTGCTACGCAGGTGCAGGGTAATAACTCGATGGCGATAGTACCGTTC 1912 | | | |||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1520 GTGCTGGAAGAAACCGCTACGCAGGTGCAGGATAATAACTCGATGGCGATAGTACCGTTC 1579 Query 1913 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCACGGACCAATACAACCCATTCTTG 1972 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1580 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCATGGACCAATACAATCCATTCTTG 1639 Query 1973 GAAGAACCAGTTGC-GCAGTTAGCTACAGCCGGAG-AACCAATGATCACGTTCGGTGGCT 2030 |||||||||||||| | |||||||| |||||| || ||||||||| ||||||| ||| || Sbjct 1640 GAAGAACCAGTTGCAG-AGTTAGCTGCAGCCG-AGGAACCAATGACCACGTTCAGTGTCT 1697 Query 2031 TGGCTTTGACAGGGTTTCAGCCAGAACCGACATTTCAGGTGAACGTTCCTGATGATTTTG 2090 |||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1698 TGGCTTTGACAGAGTTTCAGCCAGAACCGACGTTTCAGGTGAACGTTCCTGAAGATTTTG 1757 Query 2091 AGCCGTCTTCTACACCAACATTTAAGGCCACGGAGACTTTGCCTATGAAATGTGACCCGT 2150 ||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||| | Sbjct 1758 AGCCGTCTTCTACACCAACGTTTAAGGCCACGGGGACTTTGCCTGTGGAATGTGACCCAT 1817 Query 2151 TTACAACATTTGAGAGT--TTT-GGGTTCGGAGAGACATTTTCAGAAAATGGAGGGGTAA 2207 ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1818 TTACAACATTTGAGAGTACTTTTGGGTTCGGAGAGACATTATCAGAAAATGGAGGGGTAA 1877 Query 2208 ATCAGCAATCTGTATTGCAAGAACAGCAGATATGGTTGCAGAACCAGAAAAAGATCATAG 2267 ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1878 GTCAACAATCTGTGTTGCAAGAACAGCAGTTATGGTTGCAGAACCAGAAAAAGATCATAG 1937 Query 2268 CCAAGCACTTGAGTTGATACAAAATTTATTTGGCTAG 2304 ||||||||||||||||||| |||| |||||||||||| Sbjct 1938 CCAAGCACTTGAGTTGATAAAAAAATTATTTGGCTAG 1974 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90959505060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5