BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05030.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470494 jgi|Araly1|470494|fgenesh2_kg.1__448__AT1G05030.1 2543 0.0
> Ahg470494 jgi|Araly1|470494|fgenesh2_kg.1__448__AT1G05030.1
Length=1706
Score = 2543 bits (1377), Expect = 0.0
Identities = 1624/1737 (93%), Gaps = 41/1737 (2%)
Strand=Plus/Plus
Query 16 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTACTTCTATATCGA-CCCAATTCT 74
|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct 1 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTAATTCTACATC-AGCCCAATTCT 59
Query 75 ATGAACCGATTAACCTTTTCTTACCCGACCCGACTCGCCCACTCTCGTAAAGCCTCTTCC 134
||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 60 CTGACCCGATTAACCTTTTCTTACCCGACCCGACTCACCCACTCTCGTAAAGTCTCTCCC 119
Query 135 TTTTCCCGTTTCTTTCGGTCTTCAAAGAGGAAGAAGCGGGTTACGACA-T-T-GTCGACG 191
|||||||| | | |||| ||||||||| ||||||||| || | | | |||||
Sbjct 120 TTTTCCCG---C--T---TCTT----GAGGAAGAATCGGGTTACGGCACTGTCGACGACG 167
Query 192 AAGAAACCAGATGACGATCACGAGATATCGCCAG-T--TCCGCCGGAGAAATTCTCCGCT 248
|||||||||||||| ||||||||| ||||||||| | || ||||||||||||||||
Sbjct 168 AAGAAACCAGATGAAGATCACGAGTTATCGCCAGATGAGAAGCTGGAGAAATTCTCCGCT 227
Query 249 GATTTGGGATGGTTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 308
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GATGTGGGATGGCTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 287
Query 309 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATCGTGTCTATTGCGCGTGAACTTGGG 368
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 288 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATTGTGTCTATTGCGCGTGAACTTGGG 347
Query 369 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 407
Query 429 ATTGGTAGCATAGTCGCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 488
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATTGGAAGCATAGTCTCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 467
Query 489 ATTTTCACGATACCCCTCATTCTTGGTGCCCTTGTGAGTGCACAAGCTCACTCCTTGGAT 548
||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 468 ATTGTCACGATACCCCTAATTCTTGGTGCCCTTGTGAGTGCACAAGCTAACTCCTTGGAT 527
Query 549 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 587
Query 609 CCAATATATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 668
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CCTATTTATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 647
Query 669 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 707
Query 729 GACCCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 788
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GACTCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 767
Query 789 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTTGAT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 768 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTGGAT 827
Query 849 GATGCCAAAGTAGTGATAAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCTGTAGAA 908
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 GATGCCAAAGTAGTGATCAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCGGTAGAA 887
Query 909 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGAACTC 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 888 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGACCTT 947
Query 969 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCTCCCTTTTTGTCCTACAGCAA 1028
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 948 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCACCCTTTTTGTCCTTCAGCAA 1007
Query 1029 TTCGCGGGCATAAATGGCGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1088
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTCGCAGGCATAAATGGTGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1067
Query 1089 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1127
Query 1149 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAGAAGCTTCTTATCGGTAGCTACTTGGGA 1208
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1128 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAAAAGCTTCTTATTGGTAGTTACTTGGGA 1187
Query 1209 ATGGCAGTCTCTATGTTTCTTATTGTTTATGCTGTTGGTTTCCCCTTGGATGAAGATCTG 1268
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 1188 ATGGCAGTCTCTATGTTTCTCATTGTTTATTCTGTTGGTTTCCCGTTGGATGAAGATCTG 1247
Query 1269 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1307
Query 1329 GGTCCTGTAACAGGTCTCATCATCCCTGAGCTAAGCAGCAACAGAACGCGTGGAAAAATC 1388
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1308 GGTCCTGTAACTGGTCTCATCATCCCTGAGCTAAGTAGCAACAGAACGCGTGGGAAAATC 1367
Query 1389 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTCCAACTTCTTGGTTGGTTTGTTCTTCCTG 1448
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1368 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTGCAACTTCTTGGTTGGTTTGTTCTTCCTG 1427
Query 1449 GATCTGGTGGAGAAATACGGGGTTGGAACGGTCTATGCCAGCTTTGGCT-CAGTATCATT 1507
|||||||||||||||| || ||||||||||| |||||| |||||||| | ||||||||
Sbjct 1428 GATCTGGTGGAGAAATTTGGAGTTGGAACGGTGTATGCCGGCTTTGGCAGC-GTATCATT 1486
Query 1508 GTTGGCAGCGGCATTCTCACACCTCTTCACGGTGGAAACAAAGGGTCGATCACTAGAAGA 1567
|||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1487 GTTGGCAGCGGCGTTCTCATACCGCTTCATAGTGGAAACAAAGGGTCGATCACTAGAAGA 1546
Query 1568 GATCGAACTGTCTTTGAACTCCAGAGACGACCTGAGTTaaaaaaaaaaaCGGTATAAGTG 1627
||| ||| ||||||||||||||| |||| | |||| |||||| |||| |||||
Sbjct 1547 GATTGAAATGTCTTTGAACTCCACAGAC--C-TGAGCTAAAAAG------GGTAAAAGTG 1597
Query 1628 AAAGAAAGAGAGAAAGACCTCAAAATTTTTATCA--GTTTTTCATCAGTTGTTGTAAAAT 1685
|||||||||||| ||||||||||| || ||| |||||||||||||||||||||| |
Sbjct 1598 GAAGAAAGAGAGAGAGACCTCAAAAAAATT-TCAATGTTTTTCATCAGTTGTTGTAAA-T 1655
Query 1686 GTAAATAGCCTGGAAATTAGCTTGTGAGAAATCTTGTGAGTATATAGATATACTTAG 1742
| | | ||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 1656 --AG-T--C-TGGAAATTAGCTTGTGAGAAATCTTGTGAATATATATATATACATAG 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5