BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05030.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value Ahg470494 jgi|Araly1|470494|fgenesh2_kg.1__448__AT1G05030.1 2543 0.0 > Ahg470494 jgi|Araly1|470494|fgenesh2_kg.1__448__AT1G05030.1 Length=1706 Score = 2543 bits (1377), Expect = 0.0 Identities = 1624/1737 (93%), Gaps = 41/1737 (2%) Strand=Plus/Plus Query 16 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTACTTCTATATCGA-CCCAATTCT 74 |||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| Sbjct 1 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTAATTCTACATC-AGCCCAATTCT 59 Query 75 ATGAACCGATTAACCTTTTCTTACCCGACCCGACTCGCCCACTCTCGTAAAGCCTCTTCC 134 ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 60 CTGACCCGATTAACCTTTTCTTACCCGACCCGACTCACCCACTCTCGTAAAGTCTCTCCC 119 Query 135 TTTTCCCGTTTCTTTCGGTCTTCAAAGAGGAAGAAGCGGGTTACGACA-T-T-GTCGACG 191 |||||||| | | |||| ||||||||| ||||||||| || | | | ||||| Sbjct 120 TTTTCCCG---C--T---TCTT----GAGGAAGAATCGGGTTACGGCACTGTCGACGACG 167 Query 192 AAGAAACCAGATGACGATCACGAGATATCGCCAG-T--TCCGCCGGAGAAATTCTCCGCT 248 |||||||||||||| ||||||||| ||||||||| | || |||||||||||||||| Sbjct 168 AAGAAACCAGATGAAGATCACGAGTTATCGCCAGATGAGAAGCTGGAGAAATTCTCCGCT 227 Query 249 GATTTGGGATGGTTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 308 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 GATGTGGGATGGCTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 287 Query 309 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATCGTGTCTATTGCGCGTGAACTTGGG 368 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 288 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATTGTGTCTATTGCGCGTGAACTTGGG 347 Query 369 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 407 Query 429 ATTGGTAGCATAGTCGCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 488 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 ATTGGAAGCATAGTCTCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 467 Query 489 ATTTTCACGATACCCCTCATTCTTGGTGCCCTTGTGAGTGCACAAGCTCACTCCTTGGAT 548 ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 468 ATTGTCACGATACCCCTAATTCTTGGTGCCCTTGTGAGTGCACAAGCTAACTCCTTGGAT 527 Query 549 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 587 Query 609 CCAATATATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 668 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 CCTATTTATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 647 Query 669 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 707 Query 729 GACCCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 788 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 GACTCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 767 Query 789 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTTGAT 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 768 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTGGAT 827 Query 849 GATGCCAAAGTAGTGATAAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCTGTAGAA 908 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 828 GATGCCAAAGTAGTGATCAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCGGTAGAA 887 Query 909 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGAACTC 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 888 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGACCTT 947 Query 969 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCTCCCTTTTTGTCCTACAGCAA 1028 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 948 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCACCCTTTTTGTCCTTCAGCAA 1007 Query 1029 TTCGCGGGCATAAATGGCGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1088 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 TTCGCAGGCATAAATGGTGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1067 Query 1089 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1127 Query 1149 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAGAAGCTTCTTATCGGTAGCTACTTGGGA 1208 |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 1128 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAAAAGCTTCTTATTGGTAGTTACTTGGGA 1187 Query 1209 ATGGCAGTCTCTATGTTTCTTATTGTTTATGCTGTTGGTTTCCCCTTGGATGAAGATCTG 1268 |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 1188 ATGGCAGTCTCTATGTTTCTCATTGTTTATTCTGTTGGTTTCCCGTTGGATGAAGATCTG 1247 Query 1269 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1307 Query 1329 GGTCCTGTAACAGGTCTCATCATCCCTGAGCTAAGCAGCAACAGAACGCGTGGAAAAATC 1388 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1308 GGTCCTGTAACTGGTCTCATCATCCCTGAGCTAAGTAGCAACAGAACGCGTGGGAAAATC 1367 Query 1389 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTCCAACTTCTTGGTTGGTTTGTTCTTCCTG 1448 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1368 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTGCAACTTCTTGGTTGGTTTGTTCTTCCTG 1427 Query 1449 GATCTGGTGGAGAAATACGGGGTTGGAACGGTCTATGCCAGCTTTGGCT-CAGTATCATT 1507 |||||||||||||||| || ||||||||||| |||||| |||||||| | |||||||| Sbjct 1428 GATCTGGTGGAGAAATTTGGAGTTGGAACGGTGTATGCCGGCTTTGGCAGC-GTATCATT 1486 Query 1508 GTTGGCAGCGGCATTCTCACACCTCTTCACGGTGGAAACAAAGGGTCGATCACTAGAAGA 1567 |||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||| Sbjct 1487 GTTGGCAGCGGCGTTCTCATACCGCTTCATAGTGGAAACAAAGGGTCGATCACTAGAAGA 1546 Query 1568 GATCGAACTGTCTTTGAACTCCAGAGACGACCTGAGTTaaaaaaaaaaaCGGTATAAGTG 1627 ||| ||| ||||||||||||||| |||| | |||| |||||| |||| ||||| Sbjct 1547 GATTGAAATGTCTTTGAACTCCACAGAC--C-TGAGCTAAAAAG------GGTAAAAGTG 1597 Query 1628 AAAGAAAGAGAGAAAGACCTCAAAATTTTTATCA--GTTTTTCATCAGTTGTTGTAAAAT 1685 |||||||||||| ||||||||||| || ||| |||||||||||||||||||||| | Sbjct 1598 GAAGAAAGAGAGAGAGACCTCAAAAAAATT-TCAATGTTTTTCATCAGTTGTTGTAAA-T 1655 Query 1686 GTAAATAGCCTGGAAATTAGCTTGTGAGAAATCTTGTGAGTATATAGATATACTTAG 1742 | | | ||||||||||||||||||||||||||||| |||||| |||||| ||| Sbjct 1656 --AG-T--C-TGGAAATTAGCTTGTGAGAAATCTTGTGAATATATATATATACATAG 1706 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66772199485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5