BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05040.1 Length=814 Score E Sequences producing significant alignments: (Bits) Value Ahg333823 jgi|Araly1|333823|fgenesh1_pg.C_scaffold_1000388 723 0.0 > Ahg333823 jgi|Araly1|333823|fgenesh1_pg.C_scaffold_1000388 Length=498 Score = 723 bits (391), Expect = 0.0 Identities = 461/496 (93%), Gaps = 0/496 (0%) Strand=Plus/Plus Query 6 GGAAGAAGATACTAACGTCACTAGGTTCTGCAAGGCAACGTCTGCGTGTAAAGATGCAGC 65 ||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3 GGAGGAAGATAATAATGTCACTAGGTTCTGCAAGGCAACGTCTGCATGTAAAGATGCAGC 62 Query 66 ATTCTACTACCTTGAAGGATTCGACTGGAATCTCGAAGACGCCATCTCTGGTTTCCTCGG 125 ||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 63 ATTTTACTACCTTGAAGGCTTCGACTGGAATCTTGAAGACGCCATTTCTGGTTTCCTTGG 122 Query 126 TGATCAACTTCCTCCGCTCAAAATAAGAGCGACTCCACGGAGGGTGAATGAATGGCGAGA 185 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | Sbjct 123 GGATCAACTTCCTCCGCTCAAAATGAGAGCGACACCACGGAGGGTGAATGAATGGCGATA 182 Query 186 GCGATCTCGATCTCCTTTAAGAAGAAGATACTCTACTACCTCTGTCTCGGAATTTACGCT 245 ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | | Sbjct 183 TCGATCTCGATCTCCTTTGAGAAGAAGATACTCTGCTACCTCTGTCTCGGAACTTAAGTT 242 Query 246 GAAGATGCGCCAAGATGAGATAACCATAACGAAAAGCTCTGATACGGGTGCTTTGGCCAC 305 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct 243 TAAGATGCACCAAGATGAGATAACCATAACGAGGAGCTCTGATACCGCTGCTTTGGCCAC 302 Query 306 CAGTTTGGATGATAGTGGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 CAGTTTGGATGATAGTAGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 362 Query 366 AATTGTGTCTATAGCTAATCCGGTGAATCAAGAGTTTAAAGAAGAGGGATCATCAGTTCA 425 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || Sbjct 363 AATTGTGTCTATAGCTAATCCTGTGAATCAGGAGTTTAAAGAAGAGGGATCATCTGTCCA 422 Query 426 AGCTACGAAGATTTGTGAATCCACCTCCATTGAGATTCACTTGCCTAGACCGGATCCTTA 485 |||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||| | Sbjct 423 AGCTACAAATATTTGTGAATCCACCTCCATTGAGATTGACTTGCCTAGCCCGGATCCTGA 482 Query 486 TTCGGACTCTGACTAA 501 |||||||||||||||| Sbjct 483 TTCGGACTCTGACTAA 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30078981513 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5