BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05040.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333823 jgi|Araly1|333823|fgenesh1_pg.C_scaffold_1000388 723 0.0
> Ahg333823 jgi|Araly1|333823|fgenesh1_pg.C_scaffold_1000388
Length=498
Score = 723 bits (391), Expect = 0.0
Identities = 461/496 (93%), Gaps = 0/496 (0%)
Strand=Plus/Plus
Query 6 GGAAGAAGATACTAACGTCACTAGGTTCTGCAAGGCAACGTCTGCGTGTAAAGATGCAGC 65
||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3 GGAGGAAGATAATAATGTCACTAGGTTCTGCAAGGCAACGTCTGCATGTAAAGATGCAGC 62
Query 66 ATTCTACTACCTTGAAGGATTCGACTGGAATCTCGAAGACGCCATCTCTGGTTTCCTCGG 125
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 63 ATTTTACTACCTTGAAGGCTTCGACTGGAATCTTGAAGACGCCATTTCTGGTTTCCTTGG 122
Query 126 TGATCAACTTCCTCCGCTCAAAATAAGAGCGACTCCACGGAGGGTGAATGAATGGCGAGA 185
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 123 GGATCAACTTCCTCCGCTCAAAATGAGAGCGACACCACGGAGGGTGAATGAATGGCGATA 182
Query 186 GCGATCTCGATCTCCTTTAAGAAGAAGATACTCTACTACCTCTGTCTCGGAATTTACGCT 245
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | |
Sbjct 183 TCGATCTCGATCTCCTTTGAGAAGAAGATACTCTGCTACCTCTGTCTCGGAACTTAAGTT 242
Query 246 GAAGATGCGCCAAGATGAGATAACCATAACGAAAAGCTCTGATACGGGTGCTTTGGCCAC 305
||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 243 TAAGATGCACCAAGATGAGATAACCATAACGAGGAGCTCTGATACCGCTGCTTTGGCCAC 302
Query 306 CAGTTTGGATGATAGTGGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAGTTTGGATGATAGTAGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 362
Query 366 AATTGTGTCTATAGCTAATCCGGTGAATCAAGAGTTTAAAGAAGAGGGATCATCAGTTCA 425
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct 363 AATTGTGTCTATAGCTAATCCTGTGAATCAGGAGTTTAAAGAAGAGGGATCATCTGTCCA 422
Query 426 AGCTACGAAGATTTGTGAATCCACCTCCATTGAGATTCACTTGCCTAGACCGGATCCTTA 485
|||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 423 AGCTACAAATATTTGTGAATCCACCTCCATTGAGATTGACTTGCCTAGCCCGGATCCTGA 482
Query 486 TTCGGACTCTGACTAA 501
||||||||||||||||
Sbjct 483 TTCGGACTCTGACTAA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5