BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05060.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470496 jgi|Araly1|470496|fgenesh2_kg.1__450__AT1G05060.1 1232 0.0
> Ahg470496 jgi|Araly1|470496|fgenesh2_kg.1__450__AT1G05060.1
Length=970
Score = 1232 bits (667), Expect = 0.0
Identities = 743/781 (95%), Gaps = 0/781 (0%)
Strand=Plus/Plus
Query 1 AACAACAAAAGAAAATGAGTTTTCTTGGAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AACAACAAAAGAAAATGAGTTTTCTTGCAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60
Query 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACCG 120
Query 121 GCAAAAAGCTTCCATCTTCTCCGCCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAAAAGCTTCCATCTTCTCCGGCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180
Query 181 AGATTCTACGCCATTCTCTTCCTTCCAAAATATATGGTCGTCCTCCTGATCCTTCGTCTC 240
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 181 AGATTCTACGCCACTCTCTTCCTTCTAAAATCTATGGTCGTCCACCTGATCCTTCGTCTC 240
Query 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCTGACCCGAACGCAACAGTTTCTATATCCC 300
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||
Sbjct 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCCGACCCAAACGCTGCAGTTTCTATTTCCC 300
Query 301 CTGATGTCTTGAATCCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTA 360
|||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| || |
Sbjct 301 CTGACGTCTTGAATCCTCTCAGAGGTTATGTATCTCTGCCTCAGGTCACATTCGGACGCA 360
Query 361 GAAGATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGATGGGATCTACCAGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420
Query 421 GGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGC 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 421 GGAGAGACAGATACGGCACTCCTGTCAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGCC 480
Query 481 TTCAACATATTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT 540
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 TTCAACATATTGGAAAGGCATTTGCAGCCGCTACTATTATCATCTTTGGCTCTGCCACTT 540
Query 541 TGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAATGCTGATGACATAAGAACGA 600
|||| ||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||
Sbjct 541 TGGTCTTTGGAACGGCAGCCTCAAAACTTGACATGCATAATACCGATGACATAAGAACGA 600
Query 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660
Query 661 GAACTTGGGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTA 720
|||||||||||| |||||||||||||||||||||||| || ||||| ||||||| |||||
Sbjct 661 GAACTTGGGCTGGAAACATGTCGAAGAAGTGGCATATAGATAATGACGGTGGTAGTACTA 720
Query 721 TCAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780
Query 781 C 781
|
Sbjct 781 C 781
Score = 209 bits (113), Expect = 3e-53
Identities = 165/189 (87%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 814 TAGAGAAAGTCAAAGAAGAAGTTCTATATGTTTGTAAGATTCAATAAGATCTTAGGTAAA 873
|||||||| |||| | |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 782 TAGAGAAAACCAAACAGGAAGTTCTATATGTATGTAAGATGGAATAAGATCTTAGGTAAA 841
Query 874 TTATCATATTGTGCTGTAAGAACTAAGAAG------TTTCAATGTTGCTGTATAAAGGTT 927
||||| |||||||||||| ||| |||||| ||||||||||||| ||||| |||
Sbjct 842 ATATCAAATTGTGCTGTAAAAACAAAGAAGTTTCAATTTCAATGTTGCTAAATAAATGTT 901
Query 928 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTTATGAG--TTTCAATATCAATGTT 985
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 902 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTAATGAGAGTTTCAATATCAATGTT 961
Query 986 TCCTATTGT 994
||||| |||
Sbjct 962 TCCTACTGT 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5