BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05065.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919199 jgi|Araly1|919199|scaffold_100480.1 339 8e-93
> Ahg919199 jgi|Araly1|919199|scaffold_100480.1
Length=271
Score = 339 bits (183), Expect = 8e-93
Identities = 231/253 (91%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 1 ATGAAAAATAAAAATATGAATCCGAGTCGTCCTCGTCTTCTCTGTCTCATTGTTTTTCTC 60
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 6 ATGAAAAATAAAAATATGAATCCGAGTCGTC---GTCTTCTTTGTCTCATTGTTTTTCTC 62
Query 61 TTCCTCGTTATTGTTCTATCTAAAGCTTCAAGAATCCACGTCGAAAGACGACGCTTCTCA 120
||| || || |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 63 TTCTTCCTT---GTTCTATCTAAAGCTTCAAGAATCCATGTCGAAAGACAACGCTTCTCC 119
Query 121 TCCAAACCTTCTGGTGAAAACAGAGAGTTTCTCCCTTCACAAC-CTACTTTTCCGGTCGT 179
|||||||||||||||||| ||||||||||| ||||||| |||| | ||| ||||||||||
Sbjct 120 TCCAAACCTTCTGGTGAAGACAGAGAGTTTATCCCTTCTCAACAC-ACTCTTCCGGTCGT 178
Query 180 CGACGCCGGTGAAATCCTACCGGATAAACGGAAGGTTAAGACGGGATCAAACCCTTTGCA 239
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 CGACGCCGGCGAAATACTACCGGATAAACGGAAGGTAAAGACGGGATCAAACCCTTTGCA 238
Query 240 CAACAAACGATGA 252
|||||| ||||||
Sbjct 239 CAACAAGCGATGA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5