BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05070.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470498 jgi|Araly1|470498|fgenesh2_kg.1__452__AT1G05070.1 1131 0.0
> Ahg470498 jgi|Araly1|470498|fgenesh2_kg.1__452__AT1G05070.1
Length=818
Score = 1131 bits (612), Expect = 0.0
Identities = 745/808 (92%), Gaps = 14/808 (2%)
Strand=Plus/Plus
Query 62 gtgtgtCAAAATCTCTAGCACCGATTTTTCTAAATAACGTCGTCTCACAGTcacacacac 121
|||||||||||||||||||||||||||||||| ||| |||||||| ||| | ||
Sbjct 24 GTGTGTCAAAATCTCTAGCACCGATTTTTCTACATAGCGTCGTCT--CAG---C-TTCAG 77
Query 122 acaGCTCTAAAATCCCTCTACGAGGTTTTTCTTCAAACTCGCCGAAAAATCTAATCTTTA 181
|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 78 ACAGCTCTAAAATCTCTCTTCGAGGTTTTTCTTCACACTCGCCGAAAAATCTAATCTTTA 137
Query 182 CGAAGACCCAGATCGGCGGATCTAGAGTTGAAATGGCGAGACACACGGCGGCGCTGAAGA 241
||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||
Sbjct 138 CGAAGACCCAGATCGGCGGATCTAGTGTTAAAATGGCGAGACACGCGGCGGCGTTGAAGA 197
Query 242 TCGGGCTAGCTTTACTGGGGCTGAGCATGGCTGGTTACATTCTTGGTCCGCCTCTCTACT 301
|||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 198 TCGGTCTAGCTTTACTGGGGCTGAGCATGACCGGTTACATACTTGGTCCGCCTCTCTACT 257
Query 302 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCGCCTCCTCTTGTCCTTCTTGCCCCTGTG 361
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 258 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCACCTCCTCTTGTCCTTCCTGCCCCTGTG 317
Query 362 AATGCTCTACCTATTCCGCTGTCACCATTCCCAAAGAGCTCAGTAATGCTTCTTTTGCTG 421
| |||||| ||||||||||| |||| ||||||||||| |||||||||||||||| || |
Sbjct 318 AGTGCTCTCCCTATTCCGCTATCACGATTCCCAAAGAACTCAGTAATGCTTCTTACGCCG 377
Query 422 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 437
Query 482 TTACCGAGGAACTGAAGCTGCGTGAAGCAGAATCTTTAGAGAAACACAAACGAGCAGACA 541
| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 438 TAAGCGAAGAACTGAAGCTGCGTGAAGCGGAATCTTTAGAGAAACACAAACGAGCAGACA 497
Query 542 TGGGGCTATTGGAGGCCAAGAAGGTAACTTCTTCATACCAAAAGGAAGCAGATAAGTGCA 601
||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 498 TGGGGCTTTTAGAGGCCAAAAAAGTAACTTCTTCATATCAAAAGGAAGCAGATAAGTGCA 557
Query 602 ACTCGGGTATGGAAACATGCGAAGAAGCTCGAGAAAAAGCAGAATTAGCACTCGCCGAGC 661
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 ACTCAGGTATGGAAACATGCGAAGAAGCTCGGGAAAAAGCAGAATTAGCACTCGCCGAGC 617
Query 662 AGAAAAAGCTAACATCTAGGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGTT 721
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGAAAAAGCTAACATCTAAGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGAG 677
Query 722 CCACCAAGCCAAATGTTAAATCCAAAAGCAATGTTCAGGTTGCTTAGGATACCC-AAGGA 780
|||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| || ||
Sbjct 678 CCACCAAGTCAAATGTTAAACCCAAAAGCAATGTTTAGGTTGCTTAGGAAACCCCAAAGA 737
Query 781 TCAGCAAAAAGATCTTAGTTACAAACCACTCGTGTAATTGTTTGTGAATTGGATGCTAAC 840
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 738 TCAGCAAAAGGATCTTAGTTACAAACCACTTGTGTAATTGTTTGTGAATTGGATTTTAAC 797
Query 841 AATATAGTGTCAACTATTATTATACTTT 868
|| | | |||||||||||||||||
Sbjct 798 AA-A-A-----AACTATTATTATACTTT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5