BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05080.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470499 jgi|Araly1|470499|fgenesh2_kg.1__453__AT1G05080.1 1825 0.0
Ahg933231 jgi|Araly1|933231|scaffold_401219.1 148 8e-35
> Ahg470499 jgi|Araly1|470499|fgenesh2_kg.1__453__AT1G05080.1
Length=1305
Score = 1825 bits (988), Expect = 0.0
Identities = 1225/1333 (92%), Gaps = 41/1333 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGTTTTACCGGAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 ATGGCAGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGCTCTACCGGAA 60
Query 61 GATTTACTCGTAGTGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGTACTCGTAGAGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120
Query 121 CTGTCAAAACGATGGCTCTCGATTTGGACGATGGTAAGGACACTTGAGTATACAGATGAC 180
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 121 CTGTCAAAACGATGGCTGTCGATTTGGACGATGGTAAGGACACTTGAGTATAAAGAAGAC 180
Query 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240
Query 241 AAGGCGCCTGTAATAGACAGCTTGTGCATGGAACTTGGTCCACAGTGCCCTACCACTGAT 300
||| | |||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 241 AAGTCACCTGTAATAGACAGCTTGTGTATTGAACTTGGTCCACAGTGCCCTACTACTGAT 300
Query 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTGATG-ACGCTAAC 359
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTG-TGGACGCTAAC 359
Query 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTCTTGC-A 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTGTTGCGA 419
Query 419 C-CTCTCTTTCTGAACTGACTCTCTCTGACCAGATTCTCGTGAATGTTCCTTCTTC--C- 474
| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 420 CACTCT-TTT-TGAACTGACTCTCTCCGACCAGATTCTCGTGAATGTTCCTTCTTCTTCT 477
Query 475 ---GCCTATCTCCCATCCCTTA-CAGAGCTCGAACTAATCTGTGTTGTGTATAAAGACGA 530
||||||||||||| ||||| | || |||||||||||| |||||||||||||||||||
Sbjct 478 TCCGCCTATCTCCCATTCCTTAGC-GATCTCGAACTAATCCGTGTTGTGTATAAAGACGA 536
Query 531 GGATTCTCTTGTTAGCTTCTTATCGAGCTGCCCTGTTCTTGAGTTCTTGTTCGTGCTAAG 590
||||||||| |||| ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 537 GGATTCTCTCGTTACCTTGTTATCGAGCTGCCCTGTTCTTGAGACCTTGTTCGTGAAAAG 596
Query 591 GAAAATAGATGACAATGTGAAAACGTTTACTGTCAAAGTGCCTTCTTTATTGGAGTTAAC 650
||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||
Sbjct 597 GAAAATAGATGACAATGTGAAAAAGTTTACCATCAAAGTGCCTTCTTTATTGTACTTGTG 656
Query 651 GTATAAGAAT--CTCTGCTCTGATGTAGTAGACAATACCGATAGGTGTTTGGTTGTAAAT 708
||||| ||| ||| | ||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 657 GTATATTAATGACTC-G-TCTGATGTAGTAGACTATACTGATAGGTGTTTGGTTGTAGAT 714
Query 709 GCTCCTGCAGTGAACACCTGTCAAATCACTGATTATTCACTAGAATCTTTCTCCATCGAG 768
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct 715 GCTCCTGCAGTGAACACCTGTCGAATCACCGATTATTCACTAGACTCTTTCTCCATCGAG 774
Query 769 GATATGCCCTGTCTCCAGGATGCAACTATCGATGTAGATGAGGCTTATCATCCGGATGAC 828
||||||||||||||||||||||||| |||| |||| || ||| |||||||||||||||||
Sbjct 775 GATATGCCCTGTCTCCAGGATGCAAATATCAATGTTGAAGAGTCTTATCATCCGGATGAC 834
Query 829 AAATTTCTAACATCTTTTTCTTCAGTCTTGTCTCTTCGAAT-GCATTTGTCTGATGCAAT 887
||||||||||| ||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct 835 AAATTTCTAACTTCTTTTTCTTCAGTCTTGTCTCTTC-ATTTGAATTTGTCTGATGCAAT 893
Query 888 GGTTATGCGTTGTACCACCATCAACTTCTCTCGACTAATAAAGTTAAGCATATATCCCTA 947
||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| ||
Sbjct 894 GGTTATGCGTTGTACCAACGTCAACTTCTCTCGACTTATAAAGTTAAGCATATGTCCGTA 953
Query 948 TGGACCAGACATGTTGGAAACACTCCTACGTTTACTTGGAAATGCTCCAAAACTAAAAGA 1007
|||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 954 TGGACCAGACATGTTGGAGACACTCCTACTTTTACTTAAAAATGCTCCAAAACTAAAAGA 1013
Query 1008 GTTTTTGGTAGATTATCCCTCCCTTATTGCTTCTCAGAAATTTGTCTATAATCCCGAGGA 1067
|||||||||||||||| | | | ||||||||| ||||||||||
Sbjct 1014 GTTTTTGGTAGATTAT---------A---------A-A--TTTGTCTATCATCCCGAGGA 1052
Query 1068 TCTCCCATGGTCATGGAAACAACCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGA 1127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCTCCCATGGTCATGGAAACAGCCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGA 1112
Query 1128 GATATTCGAGTGGAGAGACTATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGT 1187
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GATATTCGAGTGGAGAGAATATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGT 1172
Query 1188 TTTGGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGA 1247
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTTAGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGA 1232
Query 1248 TCCAGAGTTGATCATCGAGGAAATAAAAGACCTTCCTAGGGTTTCAACAACATCTCACCT 1307
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 1233 TCCAGAGTTGATCATCGAGGAGTTAAAAGATATTCCTAGGGTTTCAACAACATCTCAACT 1292
Query 1308 TTTGTTCAAATGA 1320
|||||||||||||
Sbjct 1293 TTTGTTCAAATGA 1305
> Ahg933231 jgi|Araly1|933231|scaffold_401219.1
Length=217
Score = 148 bits (80), Expect = 8e-35
Identities = 101/111 (91%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 268 ATGGAACTTGGTCCACAGTGCCCTACCACTGATGATGTTGATATCGGAAAGTGGGTTGCA 327
|||| |||||||||| | |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 21 ATGGCACTTGGTCCAAAATGCCCTACTACTGATGATGTTGATATCGGAAAGTTTGTTGCA 80
Query 328 AAAGCTGTTGATTGTTTGGTGATGA-CGCTAACAATCAAGCTCCTCTGGTC 377
||||||||||||||||||||||| | | |||| ||||||||||||||||||
Sbjct 81 AAAGCTGTTGATTGTTTGGTGATTAAC-CTAAAAATCAAGCTCCTCTGGTC 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5