BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05080.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg470499 jgi|Araly1|470499|fgenesh2_kg.1__453__AT1G05080.1 1825 0.0 Ahg933231 jgi|Araly1|933231|scaffold_401219.1 148 8e-35 > Ahg470499 jgi|Araly1|470499|fgenesh2_kg.1__453__AT1G05080.1 Length=1305 Score = 1825 bits (988), Expect = 0.0 Identities = 1225/1333 (92%), Gaps = 41/1333 (3%) Strand=Plus/Plus Query 1 ATGGCGGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGTTTTACCGGAA 60 ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1 ATGGCAGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGCTCTACCGGAA 60 Query 61 GATTTACTCGTAGTGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGTACTCGTAGAGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120 Query 121 CTGTCAAAACGATGGCTCTCGATTTGGACGATGGTAAGGACACTTGAGTATACAGATGAC 180 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| Sbjct 121 CTGTCAAAACGATGGCTGTCGATTTGGACGATGGTAAGGACACTTGAGTATAAAGAAGAC 180 Query 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240 Query 241 AAGGCGCCTGTAATAGACAGCTTGTGCATGGAACTTGGTCCACAGTGCCCTACCACTGAT 300 ||| | |||||||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 241 AAGTCACCTGTAATAGACAGCTTGTGTATTGAACTTGGTCCACAGTGCCCTACTACTGAT 300 Query 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTGATG-ACGCTAAC 359 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTG-TGGACGCTAAC 359 Query 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTCTTGC-A 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTGTTGCGA 419 Query 419 C-CTCTCTTTCTGAACTGACTCTCTCTGACCAGATTCTCGTGAATGTTCCTTCTTC--C- 474 | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 420 CACTCT-TTT-TGAACTGACTCTCTCCGACCAGATTCTCGTGAATGTTCCTTCTTCTTCT 477 Query 475 ---GCCTATCTCCCATCCCTTA-CAGAGCTCGAACTAATCTGTGTTGTGTATAAAGACGA 530 ||||||||||||| ||||| | || |||||||||||| ||||||||||||||||||| Sbjct 478 TCCGCCTATCTCCCATTCCTTAGC-GATCTCGAACTAATCCGTGTTGTGTATAAAGACGA 536 Query 531 GGATTCTCTTGTTAGCTTCTTATCGAGCTGCCCTGTTCTTGAGTTCTTGTTCGTGCTAAG 590 ||||||||| |||| ||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 537 GGATTCTCTCGTTACCTTGTTATCGAGCTGCCCTGTTCTTGAGACCTTGTTCGTGAAAAG 596 Query 591 GAAAATAGATGACAATGTGAAAACGTTTACTGTCAAAGTGCCTTCTTTATTGGAGTTAAC 650 ||||||||||||||||||||||| |||||| |||||||||||||||||||| | || Sbjct 597 GAAAATAGATGACAATGTGAAAAAGTTTACCATCAAAGTGCCTTCTTTATTGTACTTGTG 656 Query 651 GTATAAGAAT--CTCTGCTCTGATGTAGTAGACAATACCGATAGGTGTTTGGTTGTAAAT 708 ||||| ||| ||| | ||||||||||||||| |||| |||||||||||||||||| || Sbjct 657 GTATATTAATGACTC-G-TCTGATGTAGTAGACTATACTGATAGGTGTTTGGTTGTAGAT 714 Query 709 GCTCCTGCAGTGAACACCTGTCAAATCACTGATTATTCACTAGAATCTTTCTCCATCGAG 768 |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct 715 GCTCCTGCAGTGAACACCTGTCGAATCACCGATTATTCACTAGACTCTTTCTCCATCGAG 774 Query 769 GATATGCCCTGTCTCCAGGATGCAACTATCGATGTAGATGAGGCTTATCATCCGGATGAC 828 ||||||||||||||||||||||||| |||| |||| || ||| ||||||||||||||||| Sbjct 775 GATATGCCCTGTCTCCAGGATGCAAATATCAATGTTGAAGAGTCTTATCATCCGGATGAC 834 Query 829 AAATTTCTAACATCTTTTTCTTCAGTCTTGTCTCTTCGAAT-GCATTTGTCTGATGCAAT 887 ||||||||||| ||||||||||||||||||||||||| | | | |||||||||||||||| Sbjct 835 AAATTTCTAACTTCTTTTTCTTCAGTCTTGTCTCTTC-ATTTGAATTTGTCTGATGCAAT 893 Query 888 GGTTATGCGTTGTACCACCATCAACTTCTCTCGACTAATAAAGTTAAGCATATATCCCTA 947 ||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| || Sbjct 894 GGTTATGCGTTGTACCAACGTCAACTTCTCTCGACTTATAAAGTTAAGCATATGTCCGTA 953 Query 948 TGGACCAGACATGTTGGAAACACTCCTACGTTTACTTGGAAATGCTCCAAAACTAAAAGA 1007 |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 954 TGGACCAGACATGTTGGAGACACTCCTACTTTTACTTAAAAATGCTCCAAAACTAAAAGA 1013 Query 1008 GTTTTTGGTAGATTATCCCTCCCTTATTGCTTCTCAGAAATTTGTCTATAATCCCGAGGA 1067 |||||||||||||||| | | | ||||||||| |||||||||| Sbjct 1014 GTTTTTGGTAGATTAT---------A---------A-A--TTTGTCTATCATCCCGAGGA 1052 Query 1068 TCTCCCATGGTCATGGAAACAACCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGA 1127 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1053 TCTCCCATGGTCATGGAAACAGCCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGA 1112 Query 1128 GATATTCGAGTGGAGAGACTATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGT 1187 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 GATATTCGAGTGGAGAGAATATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGT 1172 Query 1188 TTTGGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGA 1247 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 TTTAGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGA 1232 Query 1248 TCCAGAGTTGATCATCGAGGAAATAAAAGACCTTCCTAGGGTTTCAACAACATCTCACCT 1307 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || Sbjct 1233 TCCAGAGTTGATCATCGAGGAGTTAAAAGATATTCCTAGGGTTTCAACAACATCTCAACT 1292 Query 1308 TTTGTTCAAATGA 1320 ||||||||||||| Sbjct 1293 TTTGTTCAAATGA 1305 > Ahg933231 jgi|Araly1|933231|scaffold_401219.1 Length=217 Score = 148 bits (80), Expect = 8e-35 Identities = 101/111 (91%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 268 ATGGAACTTGGTCCACAGTGCCCTACCACTGATGATGTTGATATCGGAAAGTGGGTTGCA 327 |||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||| Sbjct 21 ATGGCACTTGGTCCAAAATGCCCTACTACTGATGATGTTGATATCGGAAAGTTTGTTGCA 80 Query 328 AAAGCTGTTGATTGTTTGGTGATGA-CGCTAACAATCAAGCTCCTCTGGTC 377 ||||||||||||||||||||||| | | |||| |||||||||||||||||| Sbjct 81 AAAGCTGTTGATTGTTTGGTGATTAAC-CTAAAAATCAAGCTCCTCTGGTC 130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5